KEGG   Choristoneura fumiferana (eastern spruce budworm): 141443628
Entry
141443628         CDS       T11020                                 
Symbol
Rbcn-3B
Name
(RefSeq) WD repeat-containing protein Rbcn-3B isoform X1
  KO
K24738  rabconnectin-3b
Organism
cfum  Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum04142  Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:cfum00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    141443628 (Rbcn-3B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cfum04131]
    141443628 (Rbcn-3B)
Membrane trafficking [BR:cfum04131]
 Endosome - Lysosome transport
  Acidification regulators
   Rabconnectin-3 complex
    141443628 (Rbcn-3B)
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_IFT122_1st WD40_WDHD1_1st WD40 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_EML ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd WD40_Gbeta WDR90_beta-prop_4th Beta-prop_Aladin EIF3I Beta-prop_VPS8 Beta-prop_ACSF4 WD40_MABP1-WDR62_2nd Beta-prop_WDR41 PAC11 ASA1 DSE1_N Beta-prop_SCAP Beta-prop_NOL10_N Tricorn_2nd WDR72_alpha-sol PD40
Other DBs
NCBI-GeneID: 141443628
NCBI-ProteinID: XP_073965071
LinkDB
Position
27:complement(7431582..7605643)
AA seq 1483 aa
MPGTNLIVPVVLWGKYAPTHCVSAVYLSRDQKTLVTGCYDGQICIWAVDPESLKMTPRCL
LVGHTAPVTCLSRASIIQDNNFIVSSSEAGEMCTWDLVDGKCRESVKLSQIHTNIQAYHM
CNSEDLRLFCNGYYAEILVMDPFSLEILFCLSSKMNPDWISALHVLRPSSRKDDVVLAIS
ITGTVKVWSLLGHENKQSEPIYENESKQIRCLNALSLNCCAHNQRTVLIVCAKYCQIYDA
GDFSVLCSIQAPSGERWMSGDFLAPDRVLVWSTEGKGYLYKLPANKLRGRAVSSSVPDHK
GFHGPTVAHDSPVLFGLLAHPDNKLLSCPPAMRYVITSVGGKQRRLLLRGDSAGTVSVWS
VDEAATPAANSTPSHAPVVLTSLDMAWAEMSPSPVGILDQLHHPSEPEVKLTASIYLLAA
NRLVVGREDGSIVIVNATHTVQLQLLHGNHQQLDDWPPHQLLHGHNGRVNCLLYPHHVHP
RYDRSHLVSGGIDFAVCLWDLFSGQLLHRFCVHAGEITQLIVPPTNCSPRIQKCICSVAS
DHSVTLLSLSERKCVTLASRHLFPVVSIKWRPGDDFMVVGCSDGTVYVWQMETGHLDRVL
HGMIAEEVLAACDETLADDLGGSLAAGSGDLQGLANPAVHFFRGLRHRNVAAMRAATQRG
LAALQAPAGGGAGGPLAEPARARRAQLTVQGFRSNPKDPESHILFFDIEGLIVELLSEEY
SAMSPASLEAAGLITSEYMTVAALTRSASPDATKRISDFFGRVKDKAGDMERILKEKDKH
GILAKMKEGAETVQVKLQAKAEQLKHQLEAKDQPAPTQKKRPADMTLAEPPHTMQIAQIL
ISLLHAWGLDPDLDRVCESKLGLLRPMVPVCFGVVSRHGHMAVQLPTRLGAAAAGAPEDP
RLLTTDLPPELLRQEKLTRLFSSKLHWELSTTLTTNHLLSIVALANTLMSMSNATFVPEH
EFHRRLHRPSTRSTASWAGDEERAEQLAAQQTHIKQGWSLLATLHCALLPDKVVAAGAKN
FKRPQVEMLARRWQHHCLEVREAAQALLLAELARMGPKGRKGLVDNWAQYLPLYTHTESI
NPHAAHKEPAEKAAKVQEEEFEEEEEEIVRKPSSIAELKRKQTTAVVLLGIIGAEFGQDI
TSEGAAGNKRRKDGDSRKNSVVEGFNLSASNNLARLTALALTHLLLAPPCPRLPAHTPLR
RAAVDLLGRGFTVWEPYLDVSHVLLGLLEMCSDADKLVPSMSYGLPLTAQADSCRTARHA
LTLIATARPAAFITTMAREVARCAAAQQSGQPSPAYHALQKGRAEVLRGIELLIDRMHNE
VAELLVEVMDIILHCVDQSHLKSKGLSDVFPAICRYNQVSHCPATRRIAVGSHTGQLAMY
ELRAGRCQSLAAHSGPVTACAFSPDGRYLVSYATADNRLSFWQSTAGMFGLGAAQTRCVK
CYSTAPMADVARLNPARLARLVWTNSRTVTLMLADGSETRFNV
NT seq 4452 nt   +upstreamnt  +downstreamnt
atgccaggcacgaacttaatagtccctgtggtgctctggggcaagtacgctcctacgcac
tgcgtctccgccgtgtatctctctcgggaccagaagactctagtaacgggttgctatgac
ggacagatctgtatctgggcggtggatccggagtctttgaagatgactcctcgttgtttg
cttgttggacacacagctcctgtgacttgcctgtcgagggcttctattattcaggacaac
aacttcatagtaagctcctcggaagcaggcgagatgtgtacctgggacctggtggacggg
aaatgccgcgagagtgtcaagctgtcacaaatacacaccaatatacaggcttaccacatg
tgcaacagcgaggacctgcgtctgttctgcaacggctactacgccgagatcctggtgatg
gacccgttctccctcgagatactcttctgtctcagctccaagatgaaccccgattggata
tcagctctgcacgtgctccgtccgtcctccaggaaagatgatgtggtgttggccatttca
ataactggtacagtcaaggtgtggtcactcctaggccatgagaacaagcagtccgagcct
atatacgagaacgagtccaaacagatccgctgcctcaacgcgctgtcgctcaactgttgc
gcacacaaccagcggaccgtgctcattgtgtgcgccaagtactgccagatttacgacgcc
ggcgacttctcagtactatgttcgatccaagcgccctctggcgagcgttggatgtcggga
gacttcctggccccagaccgggtcctggtgtggtctaccgaaggcaagggttacctatac
aagctgcctgccaacaaactacgcggacgggctgtcagtagctcggtgccggatcacaag
ggtttccatggcccaactgtggcccacgacagcccagtgctgtttggattgctggcccat
cctgataacaagctactgtcgtgtcctcctgcaatgcggtacgtcatcacctcagtggga
ggcaagcagcgccgcctcctgctgagaggcgactcagcggggacagtgtccgtgtggagc
gtcgatgaggccgccacgcccgctgctaacagcacgccttcgcacgcgccggtagtgctg
accagtttggacatggcgtgggctgagatgagcccgagcccggtcggcatcctggaccag
ctgcaccacccctcggaacccgaagtgaagctgaccgcttccatatacctcctggcagcc
aaccggctggtggtgggtcgcgaggacggctccatcgtcatcgtgaatgcaacccacacc
gtccagctgcagctgttgcatgggaaccatcagcaacttgacgattggcccccgcatcaa
ctgctgcacggacacaacggcagagtcaactgtcttctttatccccatcacgtccatcca
aggtacgaccgctcgcacctggtgtcggggggcatagacttcgctgtgtgcctgtgggac
ctgttcagcgggcagctgctgcaccgcttctgcgtgcacgccggcgagatcacacagctc
atagtgccgcccaccaactgcagccctcgcatccagaaatgcatctgctctgtggcctct
gaccacagcgtgactttgctcagtctctcggagcgcaagtgtgtgacgttggcgtcgcgc
catctctttccggtggtcagcataaaatggcggcccggggacgacttcatggtggtcggc
tgcagcgacggcactgtgtatgtgtggcagatggagactggccatttggacagggtgttg
cacggtatgatagcggaggaggttttggcggcgtgcgacgagacgttagcggacgacctg
ggcgggtcgctggcggccggctccggggacctgcaggggctggccaacccagcggtgcac
ttcttcaggggtctccggcaccgcaacgtggcggcgatgcgggcggcgacgcagcgcggc
ctggccgcgttgcaggcgcccgcgggcggtggcgcgggcggccccctcgcggaacctgcc
agagcccgccgcgcgcagctcaccgttcaaggcttccggagtaaccctaaagacccggag
agccacatcttgttcttcgacatcgaaggtcttatcgtggagttgctgagcgaggaatac
tcggccatgagtcccgcgagcctcgaggctgctggtctgataaccagcgaatatatgaca
gtagcggcgctgactcgctctgctagcccggacgccaccaaacggatatccgatttcttt
ggacgtgtgaaagacaaggcaggcgatatggagcggatattgaaggaaaaagacaaacat
ggtatcctggccaagatgaaggagggagcggaaacggtgcaggtcaagttacaggcgaaa
gcggagcagctcaaacaccagctcgaggccaaagaccaacccgcgccgacgcagaagaag
cgtccggcagacatgacgctagcagagcccccccataccatgcagatcgcacagatcctc
atatcgctgctgcacgcctggggccttgacccggacctggaccgcgtctgcgagtccaag
ctgggcctgctgagacccatggtgccggtatgtttcggtgtggtctcccgccacggtcac
atggctgtccagctgccgacgcggctgggcgcagccgccgccggcgctcccgaggaccct
cgcctgctcaccaccgacctgccgccggaactgcttcgtcaggagaagcttaccaggctg
ttctcgtcgaagcttcactgggagctgagcacgactctgaccacgaaccacctgctgtcc
atagtggcgctcgccaacaccctcatgagtatgagcaacgcgaccttcgtgccggagcac
gagttccatcgccgcttgcacagaccgtcaacaaggtccacggcctcgtgggccggcgac
gaggagcgcgccgaacaactggccgctcaacagacacacatcaagcagggctggtcgctg
ctggcgacactgcactgcgcgctgctgcctgacaaggtggtcgctgctggcgcgaagaac
ttcaagcgtccgcaagtggagatgttggccaggaggtggcagcaccactgcctggaggtg
cgcgaggcggcgcaggcgctgctactcgccgaactcgccagaatgggtcccaagggtcgc
aaggggctggtggacaactgggcgcagtacctgcctctgtatacacacacggagagcatc
aacccgcacgccgcgcataaggaacccgcggagaaggccgccaaagtccaagaagaagaa
ttcgaggaggaagaagaagaaatagtccgcaagccttcctcgatagcggagctgaagcgt
aaacagacgacagctgtcgttctactcggcattatcggagcggagttcggccaggacatc
actagcgaaggtgcggcgggcaacaagagacgcaaagatggcgacagcagaaagaattcg
gtcgtagaaggcttcaacctgtcggcgtcgaacaacctggcgcggctgacggcgctcgcg
ctgacgcacctgctgctcgcgccgccgtgcccgcggctgccggcgcacacgccgctgcgg
cgcgccgccgtcgacctgctggggcgagggttcaccgtctgggagccctatctggacgtc
agccacgtgttgctcggcctgcttgagatgtgctcggacgcggataagctggtcccttca
atgagctacgggctgcccctgaccgcgcaggccgactcctgccgcacggcccgccacgcc
ctcaccctcatcgccaccgccaggccagcagcgttcataacgacaatggcgcgcgaagtc
gcccgctgtgcggccgcgcagcagagcgggcagccctcgccggcgtaccacgcgctgcag
aagggccgcgccgaagtgctgcgcggtatcgagctgctcattgaccggatgcacaacgag
gtcgctgagctgttggttgaggtgatggatatcatcctgcactgcgtggaccagtcgcat
ctgaagagtaagggtttgagtgacgtgttccccgccatctgccgctacaaccaggtctcc
cattgtcccgccacgaggaggatcgcagtgggcagccacacggggcagctggcgatgtac
gagctgcgcgccggacgctgccagtcgctggcggcgcacagcgggcccgtgacggcctgc
gccttcagccccgacggccgctacctcgtgtcctacgccaccgccgacaaccgcctgtcc
ttctggcagagcaccgccggcatgttcggtttgggcgcggcgcagacacgctgcgtgaag
tgctacagcacggcgccaatggccgacgtggcgcggctcaacccggcgcggctggcgcgc
ctcgtctggaccaactcgcgcaccgtcacgctcatgctcgccgacggctccgagacgcgg
ttcaacgtttaa

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