Choristoneura fumiferana (eastern spruce budworm): 141444789
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Entry
141444789 CDS
T11020
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1-like isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
141444789
Spliceosome [BR:
cfum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
141444789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
RRM_3
RRM_MARF1
Motif
Other DBs
NCBI-GeneID:
141444789
NCBI-ProteinID:
XP_073966537
LinkDB
All DBs
Position
30:complement(5894340..6183525)
Genome browser
AA seq
428 aa
AA seq
DB search
MRTTSIQTETSCQRQKCHSCCCKGEEVADCQAVKVIFAPAMMPSIFGTVPGIPYIVKPNV
KVLEKTLSAAPAPPAASKDSCSAVNKGVKDSEHYHIFVGDLSPEIETQSLREAFAPFGEI
SDCRVVRDPQTLKSKGYGFVSFLKKSEAESAITAMNGQWLGSRSIRTNWATRKPPAPKNE
LNSKPLTFDEVYNQSSPTNCTVYCGGLGAGLGEDLMQKTFQPFGTIQEIRVFKDKGYAFI
RFSTKESATHAIVAVHNTDVNGQPVKCSWGKESGDPNNAQAPAQLGGAAYSPFGAAYTGG
VQPQASYWYNAYPQQLAGFLGGVGGVGGVGGVGGVGGVGGVQGYSYGQFGYQQQYMGSQH
RAAQMGGVQLPWALGGGVGGVGGVGGVGGVGGVGGVAAMSQPPQVLHYPVQHYQISEDEW
LQTPSLLV
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagaactacgtcgatacagactgagacgagctgtcaacgccagaagtgtcacagttgc
tgctgtaagggtgaagaggtggcggactgtcaagcagtcaaagtgatctttgcgcctgcc
atgatgccttccatcttcggcactgtgcccggtatcccgtatattgtgaagccgaatgtg
aaggtgctggaaaagacgctgagcgctgcgcccgcgccgcctgccgccagtaaagattct
tgctccgctgtgaacaaaggcgtcaaagattcagagcactaccacatcttcgtgggcgac
ctcagccccgagatcgagacgcagagcctgcgcgaggccttcgcgcccttcggcgagatc
tcggactgccgcgtggtgcgcgacccgcagacgctcaagtccaagggctatggcttcgtg
tccttcctcaagaaatctgaggcggagtctgcgatcacggcgatgaacgggcagtggctc
gggtcgcgctccatccgcaccaactgggccacgcgcaagccgcccgcgcccaagaacgag
ctgaactccaagccgctgacattcgacgaggtgtacaaccagtcgtcgccgaccaactgc
acggtgtactgcggcgggctcggcgccgggctcggcgaggacctcatgcagaagaccttc
cagcccttcgggaccatccaggagatccgcgtcttcaaggacaagggatacgccttcatc
aggttctcgacgaaggagagcgccacccacgccatcgtggccgttcacaacacggacgtc
aacgggcagcccgtcaagtgcagctggggcaaggagtccggcgaccccaacaacgcgcag
gcgcccgcgcagctgggcggggccgcgtacagcccgttcggcgccgcgtacacgggcggc
gtgcagccacaggcctcctactggtacaacgcgtacccgcagcagctggccggcttcctg
ggcggcgtgggcggcgtcggaggggtcggcggcgtcggcggcgtcggtggcgtcggcggc
gtgcagggctactcctacggccagtttgggtaccagcagcagtacatgggatcgcaacac
agggctgctcagatgggtggcgtgcagttgccgtgggcactgggcggcggagtgggcggc
gtgggtggcgtagggggcgtgggaggcgtgggtggcgtcggtggcgtcgcggccatgtcg
cagccgccgcaggtgctgcactacccggtgcagcattaccagatcagcgaggacgagtgg
ctgcagaccccgagcctgctggtgtga
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