Cystobacter fuscus: CYFUS_000098
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Entry
CYFUS_000098 CDS
T05065
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cfus
Cystobacter fuscus
Brite
KEGG Orthology (KO) [BR:
cfus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cfus03016
]
CYFUS_000098
Enzymes [BR:
cfus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CYFUS_000098
Transfer RNA biogenesis [BR:
cfus03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CYFUS_000098
Prokaryotic type
tRNA splicing ligases
CYFUS_000098
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ATB34691
UniProt:
A0A250IU61
LinkDB
All DBs
Position
complement(114762..116114)
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AA seq
450 aa
AA seq
DB search
MSWTQQLEKVAPGHFVLPKTKTMRVEAHLFLSDKLLWGEGPESPGLEEAVFNQVVNAASF
PGVTRVAVTPDCHVGYGVPIGTVVETEGVLLPTAAGYDIGCGMVQLQTTLTAEDVADPAK
RRQWIDEVTRRIAVGVGASRVQKQRRIDARTFAEVVRHGAQALGRHASATERDFLPVEDD
RVDIPTRAYEKREQLGSLGGGNHFTEMQVDESGRVWVMLHTGSRGFGWNIAKHFFVEGAA
ALGLGKHSEDFIWLDASSRLGKEYWNLHNMAANFAVANRLLIGEAVCGALEDVFGGTASI
YYEISHNLIQKESGRFVARKGATRAFPGGHPALTGTPWAKSGHPILIPGSMETGSAILFA
EKGAEQSIYSVNHGAGRRLSRGEARRVLDQDETDLRMMEADILLNTRTTPLDESGPCYKN
LDDVLNTVEMAGLATVARRLKPVACIKGAD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgagttggacgcaacagttggagaaggtcgcgccggggcacttcgtgctgccaaagacg
aagacgatgcgggtggaggcccacctcttcctctcggacaagctcttgtggggcgagggc
cccgagtctcccgggctcgaggaggccgtcttcaaccaggtggtcaacgccgcctccttc
ccgggtgtcacgcgcgtggcggtgacgccggactgccacgtgggctacggcgtgcccatc
ggcacggtggtggagaccgagggcgtgctgctgcccaccgcggccggctacgacatcggc
tgcggcatggtgcaattgcagaccaccctcaccgccgaggacgtggccgaccccgccaaa
cgccgccagtggatcgacgaggtcacccggcgcatcgcggtgggcgtgggcgcgtcacgg
gtacagaagcagcgccgcatcgacgcgcgcaccttcgccgaggtcgtgcggcacggggcc
caggcgctcggccgtcacgcgtccgccaccgagcgcgacttcctcccggtggaggacgat
cgggtggacatccccacgcgggcctacgagaagcgcgagcagctcggcagcctcgggggt
ggcaaccacttcaccgagatgcaggtggatgagtccgggcgcgtgtgggtgatgctgcac
acgggcagccgcggcttcggctggaacatcgccaagcacttcttcgtggagggcgcggcg
gcgctggggctcggcaagcacagcgaggacttcatctggctcgacgccagcagccgcctg
ggcaaggaatactggaacctgcacaacatggcggccaacttcgcggtggccaaccggctg
ctcatcggcgaggcggtgtgcggcgcgctcgaggacgtgttcggcggcacggcgagcatc
tactacgagatctcccacaacctcatccagaaggagtcgggccggttcgtggcgcgcaag
ggcgccacgcgcgccttccccggcggccaccccgccctcaccggcacgccctgggccaag
agcggccatcccatcctcatccccggctccatggagaccggcagcgccatcctcttcgcc
gagaagggggccgagcagtccatctactcggtgaaccacggcgcggggcggcggctgtcg
cgcggcgaggcgcgacgggtgttggatcaggacgagacggacctgcgcatgatggaggcc
gacatcctcctcaacacgcgcaccacgccgctggacgagtcgggcccctgctacaagaac
ctcgacgacgtgttgaacacggtggagatggcgggcctggccacggtggcccggcgactc
aagccggtggcctgcatcaagggcgcggactga
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