Cystobacter fuscus: CYFUS_003640
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Entry
CYFUS_003640 CDS
T05065
Name
(GenBank) heavy metal transporter
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cfus
Cystobacter fuscus
Pathway
cfus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYFUS_003640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfus03019
]
CYFUS_003640
03009 Ribosome biogenesis [BR:
cfus03009
]
CYFUS_003640
Enzymes [BR:
cfus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CYFUS_003640
Messenger RNA biogenesis [BR:
cfus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CYFUS_003640
Ribosome biogenesis [BR:
cfus03009
]
Prokaryotic type
rRNA helicases
CYFUS_003640
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
WSD
CMS1
Motif
Other DBs
NCBI-ProteinID:
ATB38207
UniProt:
A0A250J403
LinkDB
All DBs
Position
complement(4472434..4474158)
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AA seq
574 aa
AA seq
DB search
MNTPSDTIPTFEQLGLDAPLVEALGALGYEEPTPIQRAALPPLIAGKDLLGIAATGTGKT
AAFSLPLLQRLTPGQRAPFSTSALVLVPTRELAMQVAEAIHRYGQKMGVSVLPLYGGQPI
GQQLRVLKRGVDVVVATPGRALDHLKRQSLLLDSLRTVVLDEADEMLDMGFAEDLEAILD
ATPQERQTALFSATLPPRIASIAERHLHSPVHVKIAKEKLPAGTGPRVRQVAYIVPRPFK
AATLGRVLDVEAPTTAIVFCRTRTEVDELTVSLNGRGWRAQALHGGMDQSQRDRVLKQFK
SHAVELLIATDVAARGLDIEKLSHVVNYDVPNAPEAYVHRIGRTGRAGREGVAITLAEPR
EHRLLRNIEKLTGQKIELATVPTVADLRARRLELVRASLREALVAGELDSYRSVVESLAS
EFDLVDVAAAAVKLLHDAQVDGQSEEEEEIPLVTPPSDKGPRAPRGPRSGERPAGPGTRP
DAPRSAKRRAPPDASFDMARLFIGVGRQAGVRPSDLVGAIAGEAGVEGKRIGAIQIGDTY
SLVEVPESLADQVIAALRQTTLRGRKAQVRRDRG
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaccccctccgataccatccccactttcgaacaactgggcctggatgcccccctc
gtggaggcgctcggcgcactcggctacgaggagcccacgcccatccagcgcgccgccctg
cccccgttgatcgctggcaaggacttgctgggcatcgccgccacgggaacgggaaagacc
gccgccttctccctgccgctgctgcagcggctcaccccgggccagcgcgcgcccttctcc
acgtccgcgctcgtgctcgtgcccacgcgcgagctggccatgcaggtggccgaggccatc
caccgctatggtcagaagatgggcgtgagcgtgctgccgctctacggcggccagcccatc
ggccagcagctgcgcgtgctcaagcgcggcgtggacgtggtcgtcgccacgcccggacgc
gcgttggatcacctcaagcgccagtcgctcctgctcgactcgctgcgcaccgtggtgctc
gacgaggccgacgagatgctcgacatgggcttcgccgaggacctggaagccatcctcgat
gccaccccccaggagcggcagacggcgctcttctcggccaccctgcccccgcgcatcgcc
tccatcgccgagcggcacctgcactcgcccgtgcacgtgaagatcgccaaggagaagctg
cccgccggcaccgggccccgcgtgcgccaggtggcctatatcgtcccgcgccccttcaag
gccgccacgctcgggcgcgtgctggacgtggaggctcccaccaccgccatcgtcttctgc
cgcacgcgcaccgaggtggatgagctcaccgtgtcgctcaacggccggggctggcgcgcc
caggcgctccacggcggcatggatcagtcgcagcgcgaccgcgtgctcaagcagttcaag
agccacgcggtggagctgctcatcgccacggacgtggccgcgcgcggactggacatcgag
aagctgtcccacgtcgtcaactacgacgtgcccaacgcgcccgaggcgtacgtgcaccgc
atcggccgcacgggccgcgccggacgcgagggcgtggccatcaccctcgccgagccccgc
gagcaccggctgctgcgcaacatcgagaagctcaccggccagaagatcgaactggctacc
gtgcccaccgtggccgacctgcgcgcgcgtcggctggagctcgtgcgcgcctccctgcgc
gaggcgctcgtcgcgggcgagctcgactcctaccgctccgtcgtggagagcctcgcctcc
gagttcgacctggtggacgtggcggccgccgcggtgaagctgctccacgacgcacaggtg
gatggtcagagcgaggaggaggaggagatccccctggtgaccccgccgtcggacaagggt
cctcgcgcgccccggggcccccgctccggcgagcgccccgccgggcccggcacccgaccg
gacgcgcctcgcagcgccaagcgccgcgcgccgcccgacgcgtccttcgacatggcgcgg
ctgttcatcggcgtgggccgccaggccggcgtgcgaccctcggatctcgtgggcgccatc
gcgggcgaggcgggcgtggaaggcaagcgcatcggcgccatccagattggcgacacgtac
tcgctcgtcgaggtccccgagtcgctcgcggatcaagtcatcgccgcgttgcgtcagacc
acgctgcgtggccgcaaggcccaggtgcgccgcgatcggggctga
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