Cystobacter fuscus: CYFUS_004804
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Entry
CYFUS_004804 CDS
T05065
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cfus
Cystobacter fuscus
Brite
KEGG Orthology (KO) [BR:
cfus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfus03019
]
CYFUS_004804
Enzymes [BR:
cfus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CYFUS_004804
Messenger RNA biogenesis [BR:
cfus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CYFUS_004804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
T2SSE
AAA_25
AAA_30
NACHT
nSTAND3
Zeta_toxin
FtsK_SpoIIIE
DUF7158
Motif
Other DBs
NCBI-ProteinID:
ATB39360
UniProt:
A0A250J750
LinkDB
All DBs
Position
complement(5985628..5989338)
Genome browser
AA seq
1236 aa
AA seq
DB search
MSGDSPVPTLGGLPTLHFPPELPISSRVEDITAAITAHQVVIVAGATGSGKTTQLPKVLL
AMGRGRPRQIGVTQPRRIAATSVAARVARELGTELGTDVGYQIRFEDRSSRQTAVKFMTD
GVLLAQIHSDPLLSRYDTIVLDEAHERSLTIDFLLGWLKRILPRRPDLKVVVSSATIETE
RFSQFFGGAPVIQVEGRTFPVDVLYEPPPEDAELADSVADAVADVLSLDPDGDVLVFLPG
EREIREAENALNARELRGTVVQPLYARLSAAEQSRVFATLPERRVILATNVAETSVTIPG
IVYVVDTGVARLSRYDPRSGTTRLHIEPVSQASADQRKGRCGRVREGICVRLYDEVSFTT
RPAFTDPEIKRTGLAGVILRMKSLGLGDVEDFPFLDPPQPRAIAEGWRVLEELGAIEGKE
RTLTPLGYQLARFPVDPRIARMILAGAEYGCLDEVLIVAAALNLQDPRERPRELAQKADE
LHRRFRDEHSDFTGLLKLWAFVREAEGRGTSHLRRVCRDNFLSFLRVREWRDVQRQLEET
VRELRLPRKGRGAPARGDVLHQALLTGLLSRIGQWNPEQRHYTGAKQTRFMVHPSSALAK
KPPAWVMAFELVETSQLFARTVAKLDPEWLAAAAPHLLKRSYSEPHWSEKSARAVVKENA
TLFGLQVFKERPVSLASMDPARARLMFLEHALVRGEYRTRGAFQEKNRQVLERVARLRDK
ARRSELLDEEALLTFFDQCVPEDVTDGASFEAWRRKAEAADPDVLVLSMEDALSHDPGLS
PAYYPDAITLHGTSVPVTYTFDPAAEDDGITLSVPLLLLAQWVPGELDWTIPGWQREKLT
ALLEQLPRAQRKQLGPVPDLIDRLEKELVPFRGPMIPALARAVSRLCGVDVPEESLRADA
VAPYLRITLRVLDERGRELARSRDADALLEQYGGHARAALRSAAPTSDWERKGLTAWTFG
ELPPMVTRRVGGLEIRSYPALVDRGAAVDLVLLETSSAADAATRTGVRRLLMLAARGHVA
VSAARMPPPFPSLDGAPPARGQADAFRALVLARSVDDAFKLAPGAPLPRTKAAFEALVRE
GSPRIEGAARDWAEAVKATASELAATLAALKAASKGPSGAAAVRDIRSQLGHLFPANLIE
WIPFVRLLDYPRYLRAAQARLSRAVANPGKDAGKAAPFTPLWETFLARRATVRDQEAARE
LRWVFEELRVAIFAPEVTTPVSVTVAKVDAALAALR
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcgactcacccgtccccacccttggcggcttgcccaccctgcacttccccccc
gagctccccatctcgagccgggtggaggacatcaccgcggccatcaccgcccatcaggtc
gtcatcgtcgcgggggccaccggctcggggaagacgacgcagctgccgaaagtcctgctc
gccatggggcgcggccgcccgcgccagattggcgtcacccagccccggcgtatcgccgcg
acgagcgtggcggcgcgcgtggcacgcgagctcggcacggagctgggcacggacgtcggc
taccagattcgcttcgaggaccgctcgtcccggcagacggccgtgaagttcatgaccgac
ggggtcctgctcgcgcagattcacagcgacccgctcctgagccgctacgacaccatcgtg
ctcgacgaggcccacgagcgcagcctcaccatcgacttcctgctggggtggctcaagcgc
atcctccccaggcgccccgatctcaaggtggtggtgagctcggccaccatcgagaccgag
cgcttctcgcagttcttcgggggggctccggtcatccaggtggagggccgtacctttccg
gtggacgtgctctacgagccgccccccgaggacgccgagctcgccgactccgtcgccgat
gcggtggcggacgtgctctcgctcgacccggacggggacgtcctcgtgttcctccccggg
gagcgggaaatccgcgaggccgagaatgccctgaacgcgcgcgagctccgcggcacggtg
gtgcagcccctgtatgcgcgcctgtcggccgccgagcagtcgcgcgtcttcgccaccctc
cccgagcgccgggtcatcctcgccaccaacgtcgcggagacgtcggtcaccatcccgggc
atcgtgtacgtcgtggacacgggggtggcgcgcctgtcgcgctacgacccacgctcgggc
accacgcgcctgcacatcgagccggtctcccaggccagcgccgaccagcgcaaagggcgc
tgcggacgcgtgcgcgaggggatctgcgtgcgcctctacgacgaggtgagcttcaccacg
cggcccgccttcaccgacccggaaatcaagcgcaccgggctcgcgggggtcatcctgcgg
atgaagtccctcggcctcggtgacgtcgaggacttccccttcctcgacccgccccagccg
agggccatcgccgagggctggcgggtgctcgaggaactcggggccatcgagggcaaggag
cgcaccttgacgccgctcgggtaccagctcgcgcgcttcccagtggacccgcgcatcgcg
cggatgattctcgccggcgccgagtacgggtgcctggacgaggtgctcatcgtcgccgcg
gcgctcaacctgcaggacccgcgcgagcggccacgggagctcgcgcagaaggcggacgag
ttgcaccggcgcttccgtgacgagcactcggacttcacggggctcctcaagctgtgggcg
ttcgtgcgcgaggccgagggccgggggacgtcccatctgcggcgcgtgtgccgggacaac
ttcctgtccttcctgcgggtgcgcgagtggcgggacgtccagcgccagctcgaggagacc
gtccgcgagctgcgcctgccgcgcaagggccggggcgccccggcgcgcggggacgtcctg
caccaggcgctcctcaccgggctcctgtcccgcatcggccagtggaatccggagcagcgc
cactatacgggcgcgaagcagacgcgcttcatggttcacccctcgtcggcgctcgcgaaa
aagccccccgcctgggtgatggcgttcgagctcgtggagacgtcccagctgttcgcgcgc
accgtggcgaagctcgacccggagtggctcgcggcggcggccccccacctgctcaagcgc
agctactccgaaccgcactggtcggagaagtccgcgcgcgccgtcgtgaaggagaacgcg
accctcttcgggcttcaagtcttcaaggagcgccccgtgtccctggccagcatggacccc
gcccgggcacggctgatgttcctcgagcatgccctggtgcgcggcgagtaccgcacccgg
ggggcgttccaggagaagaaccgccaggtgctcgagcgcgtggcgcgcctgcgggacaag
gcccggcgcagcgagctgctcgacgaagaggcgctgctgacgttcttcgaccagtgcgtc
ccggaggacgtgacggacggggcgagcttcgaggcctggcgccgcaaggccgaggcggcc
gaccccgacgtgctcgtcctctcgatggaggatgccctctcgcacgacccgggcctgtcc
ccggcgtactacccggacgccatcaccctgcacggcacgtccgtaccggtgacgtacacc
ttcgaccccgcggccgaggacgacggcatcaccctgagtgtgccgctgctgctgctcgcc
cagtgggtcccgggtgagctcgactggaccatccccgggtggcagcgggagaagctcacc
gccctgctcgagcagctcccccgcgcccagcgcaagcagctggggccggtgccagacctg
atcgaccgtctcgagaaggaactggtgcccttccgcgggccgatgattccagcgctcgcg
cgtgcggtgtcccggctgtgtggggtggacgtgcccgaggagtccctccgggcggatgcc
gtggcgccgtacctgcgcatcacgctccgggtgctcgacgaacggggaagagagctcgcg
cgcagccgcgacgccgacgcgctgctcgagcagtatgggggacatgcacgggcggcgctg
cgcagcgcggcaccgacttcggactgggagcgcaaggggctgacggcctggacctttggc
gagctgccccccatggtcacccggcgggtcggcggacttgagatccgcagctaccccgcg
ctcgtcgaccggggcgccgccgtggacctggtgctgctggagacctcctccgccgccgac
gcggccacgcgcacgggggtccgccggctcctgatgctcgccgcgcgcggacacgtggcc
gtcagcgccgcgcgcatgccgccgcccttcccgtccctggacggcgcgccgcccgcgcgg
ggccaggccgacgccttccgggcgctcgtcctcgcacgcagcgtcgacgatgcgttcaag
ctcgcaccgggtgcgccgctgccccgcacgaaggcggccttcgaggcgctggtccgtgag
ggctcaccgcgcatcgaaggtgcggcccgggactgggcggaggccgtcaaggccaccgcc
tcggagctcgccgcgacgctcgccgcactcaaggccgcatcaaaggggccgagcggcgcg
gcggccgtgcgggacatccgctcgcaactcgggcacctgttccccgcgaacctcatcgag
tggattcccttcgtgcgcctgctggactacccgcgctacctccgcgcggcccaggcacgg
ctgtcgcgtgcggtggcgaaccccggcaaggacgcgggcaaggccgcgcccttcaccccc
ctgtgggagaccttcctcgccaggcgcgccaccgtgcgtgaccaggaggcggcgcgggaa
ctgcgttgggtcttcgaggagctccgcgtggccatcttcgctccggaggtgacgacgccc
gtgtcggtgacggtggcgaaggtcgacgcggccctcgcggcgctgcgctag
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