Cystobacter fuscus: CYFUS_008155
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Entry
CYFUS_008155 CDS
T05065
Name
(GenBank) cold-shock protein CspA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cfus
Cystobacter fuscus
Pathway
cfus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYFUS_008155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfus03019
]
CYFUS_008155
03009 Ribosome biogenesis [BR:
cfus03009
]
CYFUS_008155
Enzymes [BR:
cfus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CYFUS_008155
Messenger RNA biogenesis [BR:
cfus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CYFUS_008155
Ribosome biogenesis [BR:
cfus03009
]
Prokaryotic type
rRNA helicases
CYFUS_008155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
Flavi_DEAD
CMS1
Motif
Other DBs
NCBI-ProteinID:
ATB42676
UniProt:
A0A250JHQ0
LinkDB
All DBs
Position
10201137..10203542
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AA seq
801 aa
AA seq
DB search
MSDIDTPEQPGNTAEASSRPAEYVADVSFDDLNLSEPLRRGIAERGYTHPTPVQAKAFRP
VVEGRDLIVRSKTGTGKTAAFGLPLLEKLSAEDKRVRALILCPTRELALQVSEELTALGK
YKGVRVAAIYGGASMKQQEDALEEGTQIIVGTPGRVFDHINRGNLKLDGCTHAVLDEADE
MLNQGFYEEVTRILDRLPKDRQVLLFSATVPTDIQNLIARYTTNAETLLLSGDVFTVEHI
HHVRYDVSDAFPKPRNLIYVLEAEEPSNAIIFCNTRDDTALVTAVLNRNGFDAELLNGDL
PQKERERVMAKVKRGEVAFMVATDIAARGIDISGLEYVINYSLPEDPAVYLHRVGRTGRI
GNKGTAINLFSGRELATYTTLEKKFGIKFEKKEMPAPEEAMRLWAERHVREIREAASGAI
FEGFLPLAAQLKGRADADDLISFLLKYFFSHLRMEKAQASEQAGEAPAPRPSEPRRKERG
ERTERERPPRREERERPPRRDERRAEGPGESRREDRGDKRRRERPERGPSRMDAAAGEVK
LWINLGTEDGLGPGSIVTALEEAGAPANKVLRADLKPGFAYVFVAEEDLAAFEALSGKPY
KDKTLKVEKSRPRGERDPNRPPPSPDAGPGEAKLRFNLGTDDGLDEAKFIAALEAAGAPA
GKVNKALLRGHYGYAYVPESEAQAFEALDGKSHGDKAIKVDKHRPRGTRERPPRPERTET
PEVPGQARLWVGLGRSDVADEAALTSALESLGAPAGKVQRVELKPSYAYVFIAEEDVAAF
EALQGKPHNDKPLKLERARRK
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacatcgataccccggagcagccgggaaacactgccgaagcctcgtcccgcccc
gccgagtacgtggcggacgtcagcttcgatgacctgaacctttccgagcccctgcggcgc
ggcatcgccgagcgcggctacacccaccccacgcccgtccaggcgaaggccttccggccc
gtcgtggaaggcagggatctcatcgtgcggagcaagaccggcacgggcaagacggccgcc
ttcggcctgcccctgctggagaagctgtcggcggaggacaagcgcgtgcgcgccctcatc
ctctgccccacgcgcgagctggcgctccaggtgtccgaggagctcaccgccctgggcaag
tacaagggcgtgcgcgtggccgccatctacggcggcgcctccatgaagcagcaggaggac
gcgctcgaggagggcacgcagatcatcgtcggcacgcctggccgcgtgttcgatcacatc
aaccgcggcaacctcaagctcgacggctgcacccacgcggtgctcgacgaggccgacgag
atgctcaaccagggcttctacgaagaggtcacccgcatcctcgaccggcttcccaaggac
cggcaggtgctgctcttcagcgccaccgtccccacggacatccagaacctcatcgcgcgc
tacaccaccaacgccgagacgctgctgctctccggcgacgtgttcaccgtggagcacatc
caccacgtgcgctacgacgtgtcggacgcgttccccaagccgcgcaacctcatctacgtg
ctggaggccgaggagcccagcaacgccatcatcttctgcaacacccgggatgacacggcg
ctggtgacggcggtgctcaaccgcaacggcttcgacgcggagctgctcaacggagacctg
ccgcagaaggagcgcgagcgggtgatggccaaggtgaagcggggcgaggtggccttcatg
gtggccacggacatcgccgcgcgcggcatcgacatctccggcctcgagtacgtcatcaac
tactcgctgcccgaggacccggccgtctacctgcaccgcgtgggccgcaccggccgcatc
ggcaacaagggcaccgccatcaacctcttctccggccgcgagctggccacgtacaccacg
ctggagaagaagttcggcatcaagttcgagaagaaggagatgcccgcgcccgaggaggcc
atgcgcctgtgggccgaacgccacgtgcgggagatccgcgaggccgcctccggcgccatc
ttcgagggcttcctccccctggccgcccagctcaagggccgcgcggacgcggatgacctc
atctccttcctgctcaagtacttcttcagccacctgcgcatggagaaggcccaggccagc
gagcaggcgggcgaggcgccggctccacgcccgtccgagccccgccgcaaggagcgcggc
gagcgcaccgagcgcgagcgtccgccccgccgcgaggagcgggagcggcccccgcgccgg
gacgagcgccgcgcggaaggcccgggcgagtcgcgccgggaggaccggggcgacaagcgc
cgccgggagcgccccgagcggggcccctcgcgcatggacgccgccgcgggcgaggtgaag
ctgtggatcaacctggggaccgaggatggcctcgggcccggcagcatcgtcaccgcgctg
gaggaggcgggagccccggccaacaaggtgctgcgcgccgacctcaagcccggcttcgcc
tatgtcttcgtcgccgaggaggacctggcggccttcgaggcgctgagcggcaagccgtac
aaggacaagacgctcaaggtggagaagagccggccgcgcggcgagcgggatccgaaccgg
ccgccgccctcccccgacgcgggccccggcgaggcgaagctgcgcttcaacctgggcacg
gacgacggcctggacgaggcgaagttcatcgccgccctggaggccgccggtgcccccgcg
ggcaaggtgaacaaggcgctcctgcgcggccactacggctacgcctacgtgcccgagtcc
gaggctcaggccttcgaggcgctcgacggcaagtcccacggcgacaaggccatcaaggtg
gacaagcaccggccccgcggcacccgcgagcgcccgccccgccccgagcgcaccgagacg
cccgaggtgcccggccaggcgcgcctctgggtgggcctgggccgctccgacgtcgcggac
gaggccgccctcaccagcgccctggagtcgctcggcgccccggcgggcaaggtgcagcgc
gtggagctcaagccctcctacgcctacgtcttcatcgccgaggaggacgtggccgccttc
gaggcgctccagggcaagccccacaacgacaagccgctcaagctggagcgggcccggcgc
aagtag
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integrated database retrieval system
