Campylobacter fetus subsp. venerealis cfvi03/293: CFVI03293_0879
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Entry
CFVI03293_0879 CDS
T03000
Symbol
uvrB
Name
(GenBank) UvrABC nucleotide excision repair complex, subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
cfv
Campylobacter fetus subsp. venerealis cfvi03/293
Pathway
cfv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFVI03293_0879 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfv03400
]
CFVI03293_0879 (uvrB)
DNA repair and recombination proteins [BR:
cfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFVI03293_0879 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CFVI03293_0879 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
SWI2_SNF2
Kinesin
AAA_30
UB2H
Microtub_bd
AAA_16
DUF1574
AAA_22
Focal_AT
AAA_7
DUF3873
DUF87
Motif
Other DBs
NCBI-ProteinID:
AHE94191
LinkDB
All DBs
Position
complement(912516..914492)
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AA seq
658 aa
AA seq
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MDKFEISSKFKPSDDQEKAVTNIVDSIRSGNKFNVLLGVTGSGKTFTMANVIKRLNMPTL
IMTHNKSLAAQLYSEFKGFFPKNHVEYFISYYDYYQPEAYIPRQDLFIEKDSSINEELER
LRLSATANLLEFDDVVVVASVSANYGLGNPAEYKGMVLLLSLGMSLNQKELLLKLVDMGY
KRNDAYFDRGDFRVNGDVVDIYPAYFNDEAIRLEFFGDELDAMYHFDVLENKRTKDVSKF
ILYATSQFIVGENRLKQAIKDIELELEDRLAFYEKENRLVEYQRLKQRVEFDLEMLSSTG
STKGVENYARYLTGQKAGETPYSLFDYFEVSGKDYLVIVDESHVSLPQFRGMYAGDRSRK
EVLVEYGFRLPSALDNRPLKLDEFIAKKANYLFVSATPNQYEIDLSQGHVYEQILRPTGL
LDPRIEVISSDNQVEVLFDRAKAVIARGERVLVTTLTKKMSEELTRYYQELGIKVKYMHS
DIDAVERNELIRGLRKGEFDMLVGINLLREGLDLPEVSLVAVLDADKEGFLRSRTSLIQT
MGRAARNVNGTVILFANKITNSMKEAIDTTEARRKYQGDYNKKYGITPRSASRNLEDSLK
EEDLPNLYNKAKKLEKMPASERAKIVKELRKQMLEAAKNLEFEKAAALRDEIAKLREL
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggataaatttgagatatctagtaaatttaagccaagtgatgatcaagaaaaagccgta
acaaacatagtagatagcataagatccggaaataaatttaacgtccttttaggagtaact
ggaagcggtaaaacttttacgatggcaaatgtgataaaacgcctaaatatgccgactctc
atcatgacacacaacaaaagcttagccgcgcagctttatagcgaattcaaaggctttttt
cctaaaaatcacgtcgagtatttcataagctactatgattactaccaacctgaagcctat
ataccgcgccaagatctttttatagaaaaagatagctctataaatgaagaattggagcgt
ttaagacttagtgcgactgcgaatttgcttgagtttgatgatgtggtagtcgtggcttcc
gtatctgcaaactacggtttaggaaatcctgctgaatataaaggtatggttttactgctg
agtttaggtatgagcttaaatcaaaaagagttacttttaaaactagtagatatgggatat
aaaagaaacgatgcgtactttgatcgtggagattttcgagtaaatggtgacgtggtagat
atctatccagcgtattttaacgatgaagccatcagacttgagttttttggagacgagctt
gacgctatgtatcactttgacgtattagaaaataaacgcactaaagacgttagcaaattt
atactatatgcaacaagtcagtttatagtcggcgaaaatagactaaaacaagcgataaaa
gatatcgagcttgaacttgaagataggcttgcattttatgaaaaagaaaatagattagtc
gagtatcaaaggcttaagcaaagagtggaatttgaccttgagatgctctcaagcaccgga
agtaccaaaggcgtagaaaattacgcgcgttatctaacagggcaaaaagcaggagagacg
ccgtattctttgtttgattactttgaagtgagcggcaaggactatcttgttatagtagat
gaaagccacgtgagtttgccacaatttcgcggaatgtacgcaggcgatagaagtagaaaa
gaggttttagtcgagtacggtttcagacttccttctgcgcttgataacagacctttgaaa
cttgatgagtttatagcaaaaaaggcaaactatctgtttgtctcagccactccaaaccag
tatgagatagatctctcacaaggtcatgtttatgagcaaatacttaggcctaccggactt
cttgatccacgcatagaagtcataagtagcgataatcaagtagaagttttgtttgatagg
gcaaaagcagtcatagcaagaggcgaaagagtgctagtaacgactctaactaaaaagatg
agtgaagagctaacgcgctactaccaagaacttggtatcaaggtcaaatacatgcactca
gacatcgacgcagtcgaaagaaacgagcttataagaggtcttagaaaaggggagttcgat
atgcttgttggtataaatttactccgtgaggggctagatctaccagaagtctctttggta
gctgttttagacgccgacaaagagggctttttaagaagtcgtacaagcctcatacaaact
atgggaagagcagctagaaacgtaaatggaacggttatattatttgcaaataaaataaca
aattctatgaaagaagccatagatacaactgaagcaaggcgtaaatatcagggcgattat
aacaaaaagtacggtataactccgcgctcggctagtagaaatttagaagatagcttaaaa
gaagaagatctaccaaatttatataacaaagccaaaaaattagaaaaaatgccggcgagt
gagcgagcaaaaatcgtaaaagaactaagaaaacagatgcttgaagcggctaagaatttg
gaatttgaaaaagctgcggctctaagagacgagatagcaaaacttagagagctttaa
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