Chlamydia trachomatis F/SW5: FSW5_4031
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Entry
FSW5_4031 CDS
T02166
Symbol
vacB
Name
(GenBank) exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cfw
Chlamydia trachomatis F/SW5
Pathway
cfw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FSW5_4031 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfw03019
]
FSW5_4031 (vacB)
03016 Transfer RNA biogenesis [BR:
cfw03016
]
FSW5_4031 (vacB)
Enzymes [BR:
cfw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FSW5_4031 (vacB)
Messenger RNA biogenesis [BR:
cfw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FSW5_4031 (vacB)
Transfer RNA biogenesis [BR:
cfw03016
]
Prokaryotic type
tRNA degradation factors
FSW5_4031 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
Motif
Other DBs
NCBI-ProteinID:
CCE14454
LinkDB
All DBs
Position
454615..456699
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AA seq
694 aa
AA seq
DB search
MGKAKNKKKFLKNRKQVLVPGTLFIHSRKGFGFVSPDQPELYPFDIFISASDLKGALDGD
HVLVALPFSLRGGEKRKGVIHKVLSRGKTVLVGTIVSLINPTLAMVCVNTIGPEHPLKAE
LLPKRTYKLGDRLLLKTPVWKENYPSKEPPPLAMLEFIGNISNAKTDFPVIKAEFSITEE
FPDAVVQEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILG
VHIADVSHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVF
MTFSKEGFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISRTILKMAELSRIFSDIR
EQRGCTRLVLPSFTMSLDNLQEPVALIENKQTAAHKLIEEFMLKANEVIAYHISHQGITM
PFRTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHFQFVR
SMKTASYSTENKGHYGLCLDYYTHFTSPIRRYVDLIVHRLLFHPLSVEEEHLEQIVRACS
SQERIAAKAEGAFVNIKKARFLKKFIEEQPATLYKAFIITASPEGISFVLPEFCHEGFIP
AAKLPQAYVLQTKIGLEELPEHLRPGAVISVQLASVTLLTQSIEWTLVEATTKAKAKRTS
KKKKTESVTTKEKKKSSAKKKKGATKTKKGSGKN
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgggaaaagctaaaaacaaaaagaaatttctaaaaaatagaaagcaggttttggttcct
ggtaccttattcatccattctagaaagggctttggatttgtatccccagatcaaccggag
ttatatccttttgatattttcatctcagctagcgacttaaaaggtgctttggatggagat
catgttctcgtggctctccccttttctcttcgtggaggagaaaaaagaaaaggggtcatt
cataaagttctttctcgggggaaaacagtcttagtagggactattgtctctcttatcaat
ccaactctagctatggtttgtgtgaataccataggccctgaacatcctttaaaagccgag
ctcttacctaaaaggacttacaaactaggagatcggttgttactaaaaactcctgtgtgg
aaggagaattatcccagtaaagaaccacctcccttggctatgctggaatttataggcaat
atctctaatgctaagacagattttcctgttattaaagccgaattctctattacagaagag
ttccccgatgcagtggtacaggaagctagtcagttcttacaaaagcacgtaacacaagcg
ttacactcgaggaaagatctccgagatttgttatgtttcaccatagactcttcctctgct
aaggactttgacgacgcagtctcactaacttatgatcatgagggaaactatattctaggt
gttcatattgcggacgtctcccactacgtgactccaaattccgctttggatagagaagct
gctaaacggtgcaactcgatctacttccctgggaaagtcatccctatgctgccttcagcc
ctttctgacaatctgtgcagcttaaaacctaatgtggatcgcttagctgtatctgtattt
atgactttctctaaagagggattcctttctgactaccgaattttgcgtagcgtcattcgt
agtaaataccgtatgacatatgatgaggtagatgaaattatcgagaaaaaacagactcac
cctatttctagaaccattttaaagatggctgaattgagccgtattttttctgacatccga
gaacaacgtggatgcacgcgtctcgttcttccttcgttcacgatgtctcttgataattta
caagagcctgtagcccttatcgaaaacaaacaaacagctgctcataaactcattgaagag
tttatgctgaaagcgaatgaagtgatagcctatcacatttcccatcagggaataaccatg
ccattccgcacacatgaacctcctaatgaagaaagtctccttgtgtttcaagagacagca
aaggctatgggcttcaccattacacaaaccccggcgcaagaaccagattaccaatattta
ttgcaggaaacgactgcaggccatcctttggagccaatccttcattttcagtttgtacgc
agtatgaagacggcttcctattctacggaaaacaaaggccattacggtctgtgcttagac
tactatacacactttactagcccgatccgccgatacgtggatttgatcgttcaccgactg
cttttccatcctctctctgtagaagaagagcatcttgaacaaattgttcgagcctgctca
tcccaagaacgcattgcagcgaaagctgagggagcttttgtaaatattaagaaggctcgc
ttcttgaaaaaattcatagaagagcagcctgcaactctttataaagctttcattattaca
gcatccccggaagggatctcttttgtcctcccagaattttgtcatgaaggtttcattcct
gcggctaaactacctcaagcgtacgtccttcaaacaaaaataggattagaagaacttcct
gagcatttgcgtcctggagctgttatttctgtgcaactggcttctgtcaccttgctcaca
cagtctatcgagtggacgttggttgaagccacaactaaagctaaagcaaagcgtacttct
aaaaagaaaaaaacagaatctgtcacgactaaagaaaagaaaaagagttctgctaaaaag
aaaaaaggagctaccaaaacgaagaagggcagtgggaaaaattag
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