Corynebacterium freneyi: I6L56_00340
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Entry
I6L56_00340 CDS
T08562
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cfy
Corynebacterium freneyi
Pathway
cfy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6L56_00340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfy03019
]
I6L56_00340
03009 Ribosome biogenesis [BR:
cfy03009
]
I6L56_00340
Enzymes [BR:
cfy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I6L56_00340
Messenger RNA biogenesis [BR:
cfy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6L56_00340
Ribosome biogenesis [BR:
cfy03009
]
Prokaryotic type
rRNA helicases
I6L56_00340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
Cas3-like_C_2
adh_short
HEM4
DEDD_Tnp_IS110
Motif
Other DBs
NCBI-ProteinID:
QXA53940
LinkDB
All DBs
Position
69433..71826
Genome browser
AA seq
797 aa
AA seq
DB search
MGNNDNTGAENTDVIRDEQGAELNGDTAEQSAAEENVAENAVENTAEENVAENPADEQGE
QQASEDQATDNAAENTAVENTADDVETPKGDKADVAKQNKHDDDADGEEGPGFDELDLPD
EVVNAVAKVGFESPSPIQAATIPTLMSGRDVVGLAQTGTGKTAAFALPVLARIDRTVRAP
QALVLAPTRELALQVADSFQSFADHLGGISVLPIYGGQSYGIQLSGLRRGAQIIVGTPGR
VIDHLEKGSLDISDLRFLVLDEADEMLNMGFQEDVERILADTPDDKQVALFSATMPAAIR
RLSKQYLDEPQEITVKSQTRTADNIRQRFLMTAHRNKLDALTRVLEVEEFEAMIVFVRTK
HETEELAEKLRARGFTAAAINGDIAQNQRERTIDQLKSGRLDILVATDVAARGLDVDRIS
HVVNFDIPHDTESYVHRIGRTGRAGRSGEALLFVTPREGRLLRAIERATKSSLHEMQLPS
VDEVNDSRKSKFMDAITEALADDQVPVFRELIQAYADEHDTPLVDIAAALAAQSQNGDFL
MKEPPRRKRDGRGRFDEDRRGRGQRDRRSEHAARRAERAEFTREGMTKFRISVGRRQHVR
PGAIVGAIANEGGLTSKDFGHIDIRGDHTLVELPANMPQEVFDNLKDTRISGQLIHLTPD
DGTNVDDGSFAYDDRDDRGGRGGRGGRGGFRGGRGGDRGGRGGYRGGRGRGDDDRGGRGG
RGGYRGGRDDDERGGRGGRGGWDRDDRGGRGGRGGWDRDDRGGRGGRGGYRGGRDDRGGR
GGYRGGRDDRGGRGSWD
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataacgacaacacgggcgccgaaaacaccgacgtgatccgcgatgagcaggga
gcggaactgaacggcgacaccgcggagcagagcgccgcggaagagaacgtcgcagagaac
gccgtcgagaacacggccgaagagaacgtcgccgagaacccggccgacgagcagggcgag
cagcaggcctccgaagaccaggccaccgacaacgccgccgagaacacggccgtcgagaac
accgccgacgacgtggagacgccgaagggcgacaaggcggacgtcgcaaagcaaaacaag
catgacgacgacgccgacggcgaagaaggccccggcttcgacgaactcgacctgcccgac
gaagtcgtcaacgcagtcgcgaaggtcggcttcgaatccccgtcgcccatccaggccgcg
acgatcccgaccctgatgtcaggccgcgacgtcgtcggcctcgcgcagaccggcaccggc
aagaccgccgccttcgccctgccggtcctcgcccgcatcgaccgaaccgtccgcgccccg
caggccctggtcctcgcacccacccgcgaactcgcgctgcaggtcgccgactccttccaa
tccttcgccgaccacctcggcggcatctccgtcctgccgatctacggcggccagtcctac
ggcatccagctgtccggcctgcgccgcggcgcccagatcatcgtcggcacccccggccga
gtcatcgaccacctggaaaagggctcgctggacatctccgacctgcgcttcctggtactc
gacgaggccgacgaaatgctcaacatgggcttccaggaagacgtcgaacgcatcctcgcc
gacaccccggacgacaagcaggtcgcactgttctcggcgaccatgccggccgcgatccgc
cgcctgtccaagcaatacctggacgagccgcaggaaatcaccgtcaagtcgcagacccgc
accgcggacaacatccgccagcggttcctcatgaccgcccaccgcaacaaactcgacgcg
ctgacccgcgtgctggaggtcgaggaattcgaggcgatgatcgtcttcgtgcgcaccaag
cacgaaaccgaggaactcgccgaaaagctgcgcgcccgcggcttcaccgccgccgccatc
aacggcgacatcgcgcagaaccagcgtgaacgcaccatcgaccagctcaagtccggccgc
ctcgacatcctcgtggccaccgacgtcgccgcccgcggcctcgacgtcgaccgcatcagc
cacgtcgtcaacttcgacatcccccacgacaccgagtcctacgtccaccgcatcggccgc
accggccgcgccggacgctccggcgaggcgctgctgttcgtcaccccccgcgagggccgc
ctgctgcgcgccatcgaacgggccacgaagtcgtcgctgcacgaaatgcagctgccgtcc
gtcgacgaggtcaacgactcccgcaagtcgaagttcatggacgccatcaccgaagcgctc
gccgacgaccaggtgcccgtgttccgcgagctcatccaggcctacgccgacgagcacgac
accccgctcgtcgacatcgccgccgccctggccgcgcagtcgcagaacggcgacttcctg
atgaaggaaccgccccgccgcaagcgcgacggccggggccgcttcgacgaggaccgccgc
ggccgaggccagcgcgaccgccgcagcgagcacgcggcccgccgcgccgagcgcgccgag
ttcacccgcgagggcatgaccaagttccgcatcagcgtcggccgccgccagcacgtgcgc
cccggcgcgatcgtcggcgccatcgccaacgagggtggcctgacgtcgaaggacttcggc
cacatcgacatccgcggcgaccacaccctggtggagctgccggcgaacatgccgcaggag
gtcttcgacaacctgaaggacacccgaatctcgggccagctcatccacctcaccccggac
gacggcaccaacgtcgacgacgggtccttcgcctacgacgaccgcgacgaccgcgggggt
cgaggcggccgaggtggccggggcggattccgcggcgggcgcgggggagaccgtggcggg
cgcggtggttaccgcggtggccgcgggcgtggcgatgacgatcggggcggccgtggtggt
cgcggcggttaccgtggtggccgagacgacgatgagcgtggtggccgtggcggacggggc
ggctgggaccgcgacgaccgtggtggccgtggcggacggggcggctgggaccgcgacgat
cggggcggccgtggtggtcgcggcggttaccgcggtggccgggacgaccgtggtggtcgc
ggcggttaccgtggcggccgagacgatcgcggcggccgcggcagctgggactag
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