Corynebacterium freneyi: I6L56_08680
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Entry
I6L56_08680 CDS
T08562
Name
(GenBank) DEAD/DEAH box helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
cfy
Corynebacterium freneyi
Brite
KEGG Orthology (KO) [BR:
cfy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfy03019
]
I6L56_08680
Enzymes [BR:
cfy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
I6L56_08680
Messenger RNA biogenesis [BR:
cfy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I6L56_08680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_11
AAA_22
AAA_30
AAA_19
AAA_16
HA2_N
Cas3-like_C_2
ResIII
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QXA52173
LinkDB
All DBs
Position
complement(1982553..1985291)
Genome browser
AA seq
912 aa
AA seq
DB search
MTCQRSSGSLLFDVTAIGAGLPFAAVAGDLDEALAGGVAVVQAPPGTGKTTVVPPVVANH
VAAAGGAGANGGEGGGRVIVTAPRRVAVRAAARRLADLAGVELGGAVGYTVRGDRKVSRE
TSVEFATPGVITRRLLRDGDLPGVSAVVLDEVHERNLDSDILLGMLRDLRELRDDLTLVA
MSATVDAPRFAGLLGTPGAPAPVVAADSVLHPLEVRWAPASVARLNHRGVTREFLDHVAR
EAVEALADAPDGGDVLVFVPGVREVEHVVGALERMAPDGGGRGVEALALHGRLHTGEQDR
VVRGGSQDGPRRIIVSTAIAESSLTVPGVRAVVDACLSRGPRLDLSRGMSGLVTTSCARS
SAEQRAGRAARLGPGLAVRCIGESEWGGLDAWPAPEIAVADLTRAMLDVAAWGTPGAVGL
PLPDAPPPRHVAAAHSTLAALGAIDLGDENAAATTTATTSDAANTISTASAAATARITDL
GTVLAALPVDPRLGRALLAGASVLGAAKAADAVSLLDDSPRGDLTRAPGGGTRSGADASR
LKRLVEEHSAAVAAISETMDRLPKSVPAHTKADAIALVTALAWPDRIAKRRSADSDEYLF
TGGTAATAPPELRGHEWLAVSDVGRAGGRLAGRAGAVIRAAAPASRELASWAAAGLAREV
EEVGVAKHSGEARSGVGKPKVTARRRELLGAIELGAHPMAPDAEQCRRAWRDLFAADPTA
LRTHVGFGAEAEVLRRRLALLHRELGSPWPDVSDAGLAARAEELLGTAMTEPTLRPIGVD
QLRGLLPWPEAARLDELVPERLEVPSGSRIRVDYPEVGAAAEEGSAPPVLAAKLQECFGL
ADTPALVDGRVAVQLQLLSPAGRPLAVTQDLRSFWDGPYAQVRAEMRGRYPKHPWPEDPW
TAQATKRTNRRR
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgacctgccagcgttcttcgggttctttgcttttcgacgtcaccgccatcggcgcgggg
ttgccgttcgccgcggtggcgggggatctggacgaggctctggccggtggggtggccgtc
gtgcaggctccgccgggcacgggcaagacgacggtggtgccgccggtggtggccaatcat
gtggcggcggccggtggtgcgggggcgaatggcggcgagggcggcggccgggtgatcgtg
acggctccccggcgcgtggcggtgcgtgcggcggcgcggcggttggcggatctggcgggc
gtcgaactcggcggtgcggtcggttacacggtgcgcggagatcggaaggtttcacgggaa
acatcggtggaattcgccactcccggcgtgatcaccaggcgcttgcttcgcgacggcgac
ctgcccggcgtctcggccgtcgtcctcgacgaggtccacgaacgcaatctcgactccgac
attctgctgggcatgctgcgggatctgcgggagcttcgcgatgatctgacgctggtggcc
atgtccgccaccgtcgacgcgccacgcttcgccggtctgttgggcacgcccggcgcgccg
gcgcccgtcgtcgccgcagattcggtgctgcacccgttggaggtgcggtgggcgccggcg
tcggtggcccgcctgaatcatcgcggcgtgacccgggagtttctggatcacgtggcccgc
gaggcggtggaggcgttggccgatgcgccggacggcggcgacgtcctggtgttcgttccg
ggcgtccgcgaggtcgagcacgtcgtcggcgcgttggagcggatggcgccggacggcggc
gggcgcggcgtcgaggccctcgccctccatggtcggctgcacaccggcgaacaggatcgc
gtcgtccggggcgggtcgcaggatggaccgcggcggatcatcgtgtccacggcgatcgcg
gagtcgtcgctgacggtgccgggggtgcgggccgtcgtcgacgcgtgcctgtcgcgcggt
ccccgtctggatctgtcgcggggcatgtcggggctggtcacgacgtcgtgcgcgcggtcg
tcggccgagcaacgcgccggtcgcgccgcccgcctgggcccgggcctggcggtgcggtgc
atcggcgagtcggagtggggcggcctggatgcgtggcccgcgccggagatcgccgtcgcc
gatctgacccgcgccatgctcgacgtcgccgcatggggcacgcccggtgcggtcggactg
ccgcttcccgacgctcccccgccccgccacgtcgccgccgcccattcgacgctggcggcg
ttgggggccatagacctcggggacgaaaacgcagccgccaccacgaccgcgaccacctcc
gatgccgcgaacaccatctccaccgcgtcggctgcggccaccgcgcgcatcaccgacctg
ggcaccgttctcgccgctctgcccgtcgacccgcggctcggccgtgcgctgctggcgggt
gcgtcggtgctgggcgcggcgaaagcggcggatgcggtgtcgcttctcgacgactccccg
cgcggcgacctcacccgcgctcctggtggcggcacccgttccggtgccgacgcttcgcgc
ctgaagcgcctggtcgaggaacattcggcggcggtggccgcaatttccgagaccatggat
cggctgccgaagtcggtgccggcgcacacgaaggccgatgcgatcgcactggtcacggcg
ctggcctggcccgatcggatcgcgaagcgacgttccgccgactccgacgaatacctcttc
accggcggtaccgccgccaccgctcccccggagctgcgcggccacgagtggttggccgtc
tccgacgtcggccgggccggtgggcgcctcgccggtcgcgccggagccgtcatccgcgcc
gccgcaccggcgtcccgcgagctggcgtcgtgggccgccgcggggttggcgagggaagtg
gaggaggtcggcgtcgcaaagcactccggtgaggcgcgaagcggcgtcggcaaaccgaag
gtcaccgcgcggcgccgggagttgctcggggcgatcgaattgggggcgcatccgatggcc
cccgacgccgagcaatgccgacgggcgtggcgggacctgttcgccgccgacccgacggcg
ttgcggacgcatgtcgggttcggcgccgaggccgaggtactgcgtcggcggcttgccctg
ctgcaccgcgaactcggttccccctggccggatgtcagcgacgcgggattggccgcgagg
gcggaggaactgctcgggacggcgatgacggagccgacgttgcggcccatcggcgtcgac
cagctgcgcggcctgctgccctggccggaggccgcccgcctcgacgaactcgtgcccgaa
cgcctggaggtgcccagcgggtcgcgcatccgggtcgactacccggaggttggtgctgcg
gcggaggaagggtctgccccgccggttctggccgcgaaactgcaggagtgtttcgggttg
gcggacacgcccgccctcgtcgacgggcgcgtggccgtccagctgcagctgctgtcgccg
gcggggcgtccgttggcggtgacgcaggatctgcgcagcttctgggacggcccctacgcc
caggtcagggccgagatgcgcggccgctacccaaagcacccgtggcccgaggacccgtgg
accgcgcaggcgacgaagcgcaccaaccggcgcaggtag
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