Corynebacterium freneyi: I6L56_09940
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Entry
I6L56_09940 CDS
T08562
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cfy
Corynebacterium freneyi
Pathway
cfy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cfy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6L56_09940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfy03021
]
I6L56_09940
03400 DNA repair and recombination proteins [BR:
cfy03400
]
I6L56_09940
Enzymes [BR:
cfy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6L56_09940
Transcription machinery [BR:
cfy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6L56_09940
DNA repair and recombination proteins [BR:
cfy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6L56_09940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Pkinase_fungal
Motif
Other DBs
NCBI-ProteinID:
QXA54178
LinkDB
All DBs
Position
2261827..2265792
Genome browser
AA seq
1321 aa
AA seq
DB search
MLDVNNFDELRIGLATADDIRRWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRFKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAANIITSVDEEARHNDQTTLEADMLVDKKMVEDDRDQELAERAQMLEED
LAELEAAGAKADARKKVQNAAEREMKHIRERAQRELDRLDEIWNTFIKLEPKQMVIDEGI
YNELVDRYEDYFTGGMGAEAIQTLIRNFDLAAEAESLREIIRDGKGQKKLRALKRLKVVA
AFLQSGNDPAAMVLDCVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGSRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKELVAKEYAQNIKSAKRMVERQR
PEVWDVLEDVITGHPVLLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTLEKPEQPGAHA
DATEDQPEQGIYASPAEAIMAYDRGAIGLQTPIKVRISHLRPPADVEAEHFPDGWEKGQI
WTTKTTLGRVMFNELLPWNYPYVEGVMAKKPQAAIINDLASKYPMITVAQTVDKLKDAGF
YWATRSGVTIAMSDVLVLPNKKEILDSYEQKADTIEKKFRRGKLSAAERHESLVNLWKAA
TAEVGEKVEGLYPDDNPIPMIVKSGAAGNMGQIHSLAGMKGMVTNPRGEYITRPIKTSFR
EGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTTAGVDVTI
GEHVLGADGKPTGELRRAQYVETSAIARYLAAPVVDAGGNEILPTGTDLRDEEITDLLSR
GIDTVKVRSVLTCNTPTGVCATCYGRSMATGKMVDIGEAVGIVAAQSIGEPGTQLTMRTF
HQGGVGGDITGGLPRVQELFEARVPKNRAPLATATGRVRLEEDDHFFTLTIVPDDGSDEV
VFDKLSKRQGLAEITVDGRRRAIRDGDTIEMGMQLMKGAADPHEVLRIRGRRGVQHHLIE
EVQSVYRDQGVAIHDKHIEVIVRQMLRRVTVIDSGSTEFLPGSLVEHSEAVAASRQAVAE
GGKAIQMRLEIMGITKASLATDSWLSAASFQETTKVLTDAAINKRSDKLIGLKENVIIGK
LIPAGTGISRYRNIAVEPTKEAARQAAALFGSLGEGFYGAEDTYAEPTGRAVPLDDIPYD
Q
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacaacttcgacgagcttcggatcgggctcgccaccgcagacgacatt
cgccgctggtcgcgcggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
ccggagaaggacggtctgttctgcgagcggatcttcggcccgacccgtgactgggagtgc
gcctgcggcaagtacaagcgcgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgaccaagtcgaaggttcgccgtgagcgcatgggccacatcgagctggccgcgccg
gtcacgcacatctggtacttcaagggcgttccgtcgcgcctgggctacctgctggacctg
gcgccgaaggatctcgagaagatcatctacttcgcggcgaacatcatcacctccgtcgac
gaggaggcccgccacaacgaccagaccaccctcgaggcggacatgctggtcgacaagaag
atggtcgaggacgaccgcgaccaggagctggccgagcgtgcccagatgctggaggaggac
ctcgccgagctcgaggccgccggcgcgaaggccgacgcccgcaagaaggtgcagaacgcc
gccgagcgcgagatgaagcacatccgcgagcgcgcccagcgcgagctggaccgcctcgac
gagatctggaacaccttcatcaagctcgagccgaagcagatggtcatcgacgagggcatc
tacaacgagctcgtcgaccgctacgaggattacttcaccggcggcatgggcgccgaagcg
atccagacgctgatccgcaacttcgacctcgccgccgaggcggagtcgctgcgcgagatc
atccgcgacggcaagggccagaagaagctccgcgccctcaagcgcctgaaggtcgtcgcc
gcgttcctgcagtcgggcaacgacccggccgccatggtcctcgactgcgtcccggtgatt
ccgccggagctgcgcccgatggtgcagctcgacggtggccgtttcgccacctcggacctc
aacgacctctaccgtcgcgtcatcaaccgcaacaaccgcctcaagcgcatgatcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctgcaggagtcggtcgacgcg
ctgttcgacaacggtcgccgcggacgcccggtcaccggtccgggcagccgtccgctgaag
tcgctgtccgacctgctcaagggcaagcagggccgcttccgccagaacctgctgggcaag
cgagtcgactactcgggccgttcggtcatcatcgtcggcccgcagctgaagctgcaccag
tgcggtctgccgaagctgatggcactcgagctgttcaagcccttcgtcatgaaggagctg
gtggccaaggagtacgcgcagaacatcaagtcggccaagcgcatggtcgagcgtcagcgc
ccggaggtctgggacgtcctcgaagacgtcatcaccggccacccggtgctgctcaaccgt
gcccccaccctgcaccgcctgggcatccaggccttcgagcccgtgctcgtcgagggcaag
gccattcagctgcatccgctggcctgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctcccgctgtccgcggaggcgcaggccgaggcccgcatcctcatgctg
tcctcgaacaacatcctgtcgccggcatccggcaagccgctggccatgccgcgactggac
atggtcaccggtctgtacttcctgacgctggagaagcccgagcagccgggcgcccacgcc
gacgccaccgaggatcagccggagcagggcatctacgcttccccggccgaggccatcatg
gcgtacgaccggggcgcgatcggcctgcagacaccgatcaaggtgcgcatctcgcacctg
cgtccgccggccgacgtcgaggccgagcacttccccgacggttgggagaagggccagatc
tggaccaccaagaccaccctgggccgggtcatgttcaacgagctgttgccgtggaactac
ccgtacgtcgagggcgtcatggccaagaagccgcaggcggcgatcatcaacgacctcgcg
tcgaagtacccgatgatcaccgtcgcgcagaccgtcgacaagctcaaggacgccggtttc
tactgggcgacccgctccggcgtcaccattgccatgtcggacgttctggttctgccgaac
aagaaggagatcctggactcctacgagcagaaggccgacacgatcgagaagaagttccgc
cgcggcaagctctccgcggccgagcgccacgagtcgctggtcaatctgtggaaggccgcg
accgcggaggtcggcgagaaggtcgagggcctgtaccccgacgacaacccgatcccgatg
atcgtgaagtccggcgccgccggcaacatgggccagatccactccctggccggcatgaag
ggcatggtcaccaacccgcgaggcgagtacatcacccgcccgatcaagacctcgttccgt
gagggtctgtcggttctggagtacttcaacaactcgcacggttcccgcaagggcctcgcc
gacaccgccctgcgcaccgccgactcgggttacctgacccgtcgtctggtggacgtcgcg
caggacgtcatcgtccgcgaggaggactgcggcaccaccgccggcgtcgacgtcaccatc
ggcgagcacgtgctcggcgccgacggcaagccgaccggcgagctgcgccgcgcccagtac
gtcgagacctcggcgatcgcccgctacctggcggccccggtcgtcgacgccggcggcaac
gagatcctgccgaccggcaccgacctgcgcgacgaggagatcaccgatctgctgtcccgc
ggcatcgacaccgtcaaggtccgctcggtcctgacctgcaacacgccgaccggcgtctgc
gccacctgctacggccgttccatggccaccggcaagatggtcgacatcggcgaggccgtg
ggcatcgtggccgcgcagtccatcggtgagccgggcacccagctgaccatgcgcacgttc
caccagggcggcgtcggcggcgacatcaccggcggtctgccccgagtccaggagctgttc
gaggcccgcgtgccgaagaaccgcgccccgctggccacggccaccggtcgcgtgcgcctg
gaggaggacgaccacttcttcacgctgaccatcgtcccggacgacggttccgacgaggtc
gtcttcgacaagctgtcgaagcgccagggtctcgccgagatcaccgtcgacggccgccgc
cgcgccatccgcgacggcgacacgatcgagatgggcatgcagctgatgaagggtgccgcg
gacccgcacgaggttctgcgcatccgcggtcgccgcggcgtgcagcaccacctgatcgag
gaagtccagtcggtctaccgcgaccagggcgtggccatccacgacaagcacatcgaggtc
atcgtccgtcagatgctgcgccgcgtcaccgtcatcgactccggttcgaccgagttcctg
ccgggttcgctggtggagcactcggaggccgtggccgcgtcgcgtcaggcggtcgccgag
ggcggcaaggccatccagatgcgcctggagatcatgggcatcacgaaggcctcgctggcc
acggattcgtggctgtcggccgcctccttccaggagacgactaaggtgctgaccgatgcc
gcgatcaacaagcgctccgacaagctgatcggcttgaaggagaacgtgatcatcggcaag
ctgatcccggccggcacgggcatttcccgttaccgcaacatcgcggtggagccgaccaag
gaggccgcccgtcaggccgccgccctgttcggttcgctgggcgagggcttctacggtgcg
gaggacacctacgccgagccgaccggtcgcgccgtcccgctggacgacattccgtacgac
cagtaa
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integrated database retrieval system
