Campylobacter fetus subsp. venerealis 84-112: CSG_11990
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Entry
CSG_11990 CDS
T03740
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cfz
Campylobacter fetus subsp. venerealis 84-112
Pathway
cfz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSG_11990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfz03019
]
CSG_11990
Enzymes [BR:
cfz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CSG_11990
Messenger RNA biogenesis [BR:
cfz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CSG_11990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
SUa-2TM
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CDF65110
LinkDB
All DBs
Position
complement(1170921..1172615)
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AA seq
564 aa
AA seq
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MLFSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPIL
EKLSSKERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLPFKTLPVFGGVSSYPQIQA
LKSGIDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKR
QNLLFSATYPSEVMSLCNSMLKDPLRIQIEEQNSTALNIIQRVILVDRDKKMELLNEVFG
VESIDQALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKILVA
TDIAARGLDIKELPFVINLELPNVPEDYVHRIGRTGRAGNDGVAISLVCVDEFKFLIDIE
KLIDKKLIRESFSGFEADLRVKPQPIRRGQNMNKSSERDDRNGNKIDKKERKPREFNSDK
KDESKREYRRDGVKSEFSKDKKEFSKNSRAKDSNSSFDGEAKREFKFKKDDKKFGEKKKS
FGDKKSFDDKDKKFSGEKKFSSDKKPRSSDKSSDEKYSGNKFSPKKKFGSDKPDRGDKFT
KDAPKPRASSRPRKPQSDKKSTTK
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgttattttcagatttcgatctcagctctgctatattagaagcattaaaagagctaaat
tacgacgctcctacgcagatccaacaagtcgcgatacctgctataatgcaaggaaaagat
atcttagcaggagctaggacaggcacgggaaaaactgctgcatttgcgctacctatatta
gaaaaattatcgtcaaaagaacgcaacaaaaagcgtcctcaaactcgtgttttagtgctt
gttcctacaagagaacttgcaaatcaagtcacgcaaaacatcaaatcttacgcgaaaaag
ttaccgtttaaaactttgccagtatttggcggagttagctcttacccacaaattcaagct
ttaaaaagtggtatagatatcgtggtggcgactcctggcagacttttggatcttgctttg
caaaatgctttaagcttagagcatatcgatacgctagtatttgacgaggctgatcgtatg
tttgatatgggatttatccacgatatcaaacaaatagtaaaaatgcttcctgaaaaaaga
caaaatttactattttccgcgacgtatccaagtgaggttatgtcgctttgtaactctatg
ctaaaagatcctttgcgtatccaaatagaagagcaaaacagcactgctttaaatatcata
caacgcgtgattttagtagatcgagataaaaaaatggagcttttaaacgaggtttttgga
gtggagagtatagatcaagctttggtttttactcgtaccaaaagaagtgcggataaatgt
tcatcttatctacatactttaggctttagcgtagctgctttgcatggagataaaagtcaa
agcgtgcgttcaaaaacacttgagaaatttaaaaacggtaaaacaaaaattcttgtagca
acggatatagcagcgcgcggattagacataaaagaacttccgtttgttataaatttagag
cttccaaatgtgcctgaggattatgttcataggataggtagaacaggacgcgccggaaat
gatggcgttgcgatatctttggtttgcgttgatgagtttaagtttttaatcgatattgaa
aaattgatcgataaaaaactaataagagaaagctttagcggatttgaagccgatctaaga
gtaaaacctcagcctatcagacgtggacaaaatatgaacaaaagctcagaacgagatgac
agaaacggaaataaaatagataaaaaagagagaaagccaagagagtttaatagcgataaa
aaagacgagtcaaaacgcgaatacagaagagatggtgtcaagagtgaattttcaaaagac
aaaaaggaattttctaaaaatagtcgcgcaaaagattcaaatagtagttttgatggcgaa
gcaaaaagagaattcaaatttaaaaaagacgataaaaaatttggcgagaaaaagaaatct
ttcggcgataaaaaatcttttgatgacaaagacaaaaaatttagcggcgaaaagaaattt
agctctgataaaaagcctagaagtagtgacaaaagttctgatgaaaaatattctggtaat
aaatttagcccgaaaaagaaatttggaagtgacaaaccagacagaggcgataaatttact
aaagacgctccaaagccaagagcttcaagcagaccacgcaaaccacaatctgataaaaaa
tccactacaaaatag
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