Campylobacter fetus subsp. venerealis 84-112: CSG_1670
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Entry
CSG_1670 CDS
T03740
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cfz
Campylobacter fetus subsp. venerealis 84-112
Pathway
cfz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cfz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CSG_1670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfz03021
]
CSG_1670
Transcription machinery [BR:
cfz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CSG_1670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
DUF1374
Sigma70_r4_2
HTH_11
MCR_beta_N
Motif
Other DBs
NCBI-ProteinID:
CDF64087
LinkDB
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Position
complement(152836..154743)
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AA seq
635 aa
AA seq
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MSAAKETFAQIEELFKENSKGYVTFEKLVRLFDKAPTVATIKKVETLAELYKIQLISAVE
AAKIKNIQEAKKSEEDKLKIIDTALEEEFDLTSENDLLEWSRSDSPVRMYLREMGQISLL
TKEEEVEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLINRERRVKELFKSFDEEESE
EEEEETTEDEFEYDENEEDSATAKKQPKKLDKRAEKVIESFKALEKAKKEWMKIVAKQNI
SIEEEADLVAKLNLTFKKKVLKDKLMDLGPTSKLINEIVKSMETALKSDDDFDKELKRLE
YRLPMFSAELKKNHQGILKDITKLSKEDIISRVPEATMVSTYVEIKKLFQTKEASKTGFN
LEPKELKIVLDQIKRGKNISDDAKARMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGL
MKAVDKFEYKKGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKINRKYLQ
EEGKEPDVSIIAREVGLSIDKVKQVIKITKEPISLEAPIGSEDDGKYGDFVEDKTTLSPM
EQILKGDLKEQIDEVLDQLNDREKAVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIE
SSAIKKLKHPKVGRKLKNYIIDSSLYRFISSKVLS
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcagcaaaagagacttttgcacaaatagaagagttatttaaagagaactcaaaa
ggttatgttacttttgaaaagcttgtaagattgtttgacaaagctccaacggttgctacc
ataaaaaaagtcgaaactctagccgaactctataaaatacagctgataagtgctgtagaa
gcggcaaagataaaaaatatacaagaagctaaaaaatcagaagaagacaagctaaaaatc
atagataccgccttagaagaggaatttgatctaactagtgagaatgatcttttagaatgg
tcacgatcagacagccccgtgagaatgtatcttagagaaatgggtcaaatttcacttcta
acaaaagaagaagaggtagaaatcagtaaaaaaatcgagcttggagaagatatcatcata
gatgctttttgctcagtgccgtatcttattgattttattttagattacaaagagcctctt
ataaatagagaacgccgagttaaagagctttttaaaagttttgacgaggaagagagcgaa
gaagaggaagaagaaacaactgaagatgaatttgaatatgatgagaacgaagaagatagc
gctacagcaaaaaaacagccaaaaaaacttgacaaaagagcagaaaaagtaatagaaagc
tttaaagctcttgaaaaagccaaaaaagaatggatgaaaatagtagcaaaacaaaatata
tctatcgaagaagaagccgatctagtagcaaagttaaatttaacttttaagaaaaaagtt
ttgaaagataaattaatggatcttggacctacaagcaaacttataaatgaaatagtaaaa
tccatggaaacggctttaaaaagcgatgatgactttgataaagagctaaaacgccttgaa
tatcgtcttcctatgtttagtgccgaactcaaaaaaaaccatcaaggcatactaaaagat
ataacaaagctttcaaaagaagatatcatatcaagagttcctgaagcaactatggtatca
acttatgtagagataaaaaagttatttcaaacaaaagaagctagcaaaactggatttaat
ctagaaccaaaagagctaaaaatagtattagatcagataaaacgcggtaaaaatataagt
gacgatgcaaaagctagaatggcaaaatcaaacctaaggctagtagttagtatagctaag
cgatatacaaatcgcggacttccgtttttggatcttattcaagaaggaaatattggtctt
atgaaagcggttgataaatttgaatataaaaaaggttataaattttcaacatatgctaca
tggtggataagacaagctataagtcgtgctatagctgatcaggccagaacgatacgcata
ccgatccatatgatagaaactataaaccgtataaataaaatcaatagaaaatatctacaa
gaagaaggaaaagagccagatgtaagcatcatagcaagagaggtaggtcttagtatagat
aaagttaagcaagttatcaaaattaccaaagaacctataagtcttgaagctccaatcggc
agtgaagatgatggcaaatacggcgattttgtagaagataaaacaactcttagcccaatg
gaacagatactaaaaggcgacttaaaagagcagatagatgaagtattagatcagctaaac
gatcgtgaaaaagcggttataagaatgcgttttggtcttttagaagatgaaagcgataga
acattagaagagataggaaaagaactaaacgtgacaagagagcgtgtcagacagatcgaa
agctcagccataaaaaaactaaaacatccaaaagtaggtagaaaactcaaaaattacata
atagattctagtctatatcgctttatatcgtctaaagtactatcctaa
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