Chryseobacterium gambrini: PFY09_06565
Help
Entry
PFY09_06565 CDS
T08920
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cgam
Chryseobacterium gambrini
Pathway
cgam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFY09_06565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgam03019
]
PFY09_06565
03016 Transfer RNA biogenesis [BR:
cgam03016
]
PFY09_06565
Enzymes [BR:
cgam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PFY09_06565
Messenger RNA biogenesis [BR:
cgam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PFY09_06565
Transfer RNA biogenesis [BR:
cgam03016
]
Prokaryotic type
tRNA degradation factors
PFY09_06565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_2
PCB_OB
KH-I_KHDC4-BBP
Cytochrom_C_2
Motif
Other DBs
NCBI-ProteinID:
WBV53982
LinkDB
All DBs
Position
complement(1478922..1481186)
Genome browser
AA seq
754 aa
AA seq
DB search
MSVPQAITELITLADGREITIETGKLAKQADGSVVVKMGGTMLLATVVANKEANPGVDFL
PLTVDYREKFYAGGKIPGNFFRREARPSDQEILTMRLVDRVLRPLFPEDFHAEVQVMISL
ISYDGQSIPDDLAGLAASAAIAITDIPFNGPMSEVRVVRIDGELSINPKFEDLKNSDLDI
MVGATKDSIVMVEGEMKEISEQEMLEAITFAHAEIKKQVEAQERLAEKVGKSFPKREYSH
ETHDEEIREKVWKETYDKVYEVAKTPSGKEERGEKFKAIREEFLAQYAEDAEELERVTPF
VKVYYHDVEKEAMRQMILNDKIRLDGRDPETIRPIWSEIDYLPGAHGSAIFTRGETQSLT
AVTLGSVKDANMVDSVMANYDERFFLHYNFPPFSTGEARPLRGTSRREVGHGNLAQRALA
NMIPEENPYTIRIVSDILESNGSSSMATVCAGTLALMDAGIQITKPVSGIAMGLVTDVKS
GKFTVLSDILGDEDHLGDMDFKVTGTADGITACQMDIKIQGLSMDIMEKALLQAKDGRIH
ILNKITETIAAPREDVKPHAPKMVMMEIPKDFIGAVIGPGGKIIQQMQKDTDTVIAIEEI
GEIGRIEISGVSREKINEAIAKINEITFVPVVGEVYKGKVVKVMDFGAFVAIAKGTEGLL
HISEIEWARLDKVPYNEGDEVEVKFMGYDDRKKMKLSRKVLLPRPPRPEKKEGEQRGPRP
EGQNNRSERPNRPEGQRRPEGEKPTGDNNPSSEA
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtacctcaagcaattacagagctgattactcttgcagacggcagagaaatcaca
attgaaacagggaaattagctaagcaagctgatggatctgtagtcgtaaaaatgggcgga
acaatgcttttagcaactgttgtagccaacaaagaagccaatcctggtgtagatttttta
cctttaacagtagattacagagaaaaattctatgcagggggtaaaatccccggaaacttt
ttcagaagagaagcaagaccatctgatcaggaaatccttacgatgcgtttggtagacaga
gttttgagacctttgttccctgaagatttccatgcggaagttcaggtaatgatttcatta
atttcttatgacggacagtcgattcctgatgatttagcaggtttggcggcgtctgcagcg
attgccattacagatattcctttcaacggaccgatgtctgaagtacgagtggtaagaatt
gacggtgagctttctattaatcctaaattcgaagatcttaagaattctgatcttgatatt
atggtgggagctaccaaagattctatcgtaatggtggaaggtgaaatgaaagaaatctct
gagcaggaaatgctggaagcaatcactttcgctcacgctgaaattaaaaaacaagttgaa
gctcaggaaagattagctgaaaaagtaggaaaatcattcccgaaaagagaatattctcac
gaaactcatgacgaggaaatccgtgaaaaagtttggaaagaaacttacgataaagtatat
gaagtagcgaaaacaccttcaggcaaagaagaaagaggagaaaaattcaaggcgatccgt
gaagaattccttgctcagtatgcagaagatgcagaagagcttgaaagagtaactcctttc
gtaaaagtatattaccacgatgtggaaaaagaagcgatgcgtcagatgattttgaatgat
aaaatccgtcttgatggtcgtgatcctgaaacgattcgtccgatctggagcgaaatcgat
tatttaccgggagcgcacggttctgcaattttcacaagaggtgaaacgcaatctttaacg
gctgtaactttaggttcggtaaaagatgcgaacatggtagacagcgtaatggcaaactat
gacgaaagattcttcttacattataacttcccgccgttctcaacgggtgaagctagacct
ctgagaggaacttcaagaagagaggttggtcacggaaaccttgctcagagagctttggca
aatatgatccctgaagaaaatccttatacgatccgtatcgtttctgatattttagaatca
aacggttcttcttcaatggcgacagtttgtgcgggaacattggcattgatggatgcgggt
attcagattacaaaaccagtttcaggtattgcaatggggttggtaactgatgtaaaatca
ggaaaattcacggtactttctgatatcttaggagacgaagatcatttaggtgatatggac
tttaaggtaacaggaactgcagacggaatcacagcttgtcagatggatatcaaaatccag
ggattatcaatggatattatggagaaagcgcttttacaggctaaagacggaagaatccat
atcttaaataaaattactgaaacaattgctgctccaagagaagatgtgaaacctcacgct
ccgaaaatggtaatgatggaaattcctaaagatttcatcggtgctgtaatcggacctggt
ggaaaaatcattcagcaaatgcagaaggatacagatactgttattgcaattgaagaaatt
ggagaaatcggaagaatcgaaatttccggtgtcagcagagaaaaaatcaacgaagcgatt
gcaaaaatcaatgagattacttttgttcctgtagtaggggaagtttacaaaggtaaggtt
gtgaaggtaatggatttcggtgctttcgtagcgattgctaaaggtactgaaggtcttctt
catatttctgagatcgaatgggctcgtttagacaaagttccttataacgaaggggatgaa
gtggaagtgaaatttatgggctatgatgaccgtaagaaaatgaagctttccagaaaagtt
ttgttgccaagacctccaagacctgagaagaaagaaggtgaacaaaggggaccaagaccg
gaaggacagaacaacagatctgaaagaccaaacagaccggaaggacagagaagaccggaa
ggtgaaaaacctacgggagataataatccttcatctgaagcttaa
DBGET
integrated database retrieval system
