Chryseobacterium gambrini: PFY09_08710
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Entry
PFY09_08710 CDS
T08920
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cgam
Chryseobacterium gambrini
Pathway
cgam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFY09_08710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgam03019
]
PFY09_08710
03400 DNA repair and recombination proteins [BR:
cgam03400
]
PFY09_08710
Enzymes [BR:
cgam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFY09_08710
Messenger RNA biogenesis [BR:
cgam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFY09_08710
DNA repair and recombination proteins [BR:
cgam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PFY09_08710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF7022
Cas3-like_C_2
LexA_DNA_bind
HTH_24
Motif
Other DBs
NCBI-ProteinID:
WBV54391
LinkDB
All DBs
Position
1933369..1935270
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AA seq
633 aa
AA seq
DB search
MISQQDFQELKFKTLKHFWGYDRFRDSQEAIIDSVINEKDTLVLLPTGAGKSLCYQLPAL
LKEGTCLVISPLLALMKDQVNQLKSRGIEAEYLSSELDEYDAENIYDRCKEGLTKMLYVS
PERITNKQFLQNIEEIELSFIAVDEAHCISEWGQDFRPSYQNIKEFRKKNPKIPCLALTA
TATPKVLEEIKLKLELKNPQVFQKSFKRDNIKIFMEEVSDKFQKVYDILKFSNEAGIVYV
RTRKEAELLSEFLKKNQLKNVDYFHAGLSTKEKNTKQEVWNRSNNHVLISTNAFGMGIDK
DNVRFVLHYSPAPSIENYYQEIGRSGRDGKESFAFLLWNKQELLNFDQILKNQIPNKAEF
LKIVTYLYSIFQVAEFELPEKVFQLNINGIYNFTKLSNAKIRNVLNFLHNQEIIYFNEHK
SLSSLQLLMEAHEIDQLPRKDAYFLELMLRTISGITTHKVMFSEHQVSGKIGSSVELIKE
RLKELQQKGYVEYIDGALSSIKFLKPRDERLNGSIYWKLFEHIQKNKIQKWEEMKFYIED
DKYCKMKLILNYFGEKNAKNCGQCSVCERNKQSIFGKNISQQILNLLSKRPATIEELSIQ
LSYHSKENILENLIFLLDTGKVKMLNFRTYALA
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgatttctcagcaagattttcaagagttaaaatttaaaaccctgaaacatttttgggga
tatgatcgttttcgcgattctcaggaagcgattatcgattctgttattaatgaaaaagat
actcttgtcctgttgccaaccggagccggaaaatctctttgttatcagcttcccgcctta
ttaaaagaaggaacctgtctggtcatttctcctttattggcactgatgaaagatcaggta
aaccaattgaaatcaagaggaattgaagcagaatatctttcttcggaactggatgagtat
gatgcagaaaatatctatgaccgatgcaaagaaggactaacaaaaatgctgtatgtctct
cctgaaagaatcaccaacaagcagtttctccaaaatattgaagaaatcgaactgtctttc
atcgcagttgatgaggcgcactgtatctcagaatggggacaggatttccgcccgagttat
cagaatatcaaagaattcagaaaaaaaaaccctaaaattccttgtctggctttaacggca
actgctacgccaaaagttttggaggaaataaaattaaaactggaactaaaaaatccgcag
gtttttcagaaaagttttaaaagagataacattaaaattttcatggaagaagtttcggat
aaatttcagaaagtatatgatattttaaaattctcgaatgaagcaggaattgtttatgtg
agaacaagaaaagaagccgaactcctcagtgaatttctgaaaaaaaatcagcttaaaaat
gtagattattttcacgcaggtttatccacgaaagaaaaaaacacgaaacaggaagtatgg
aacagaagcaataatcatgtcttaatttccaccaatgcattcgggatgggaattgataaa
gataatgtccgttttgtactgcactactctcctgctccttccattgaaaattattatcag
gaaatcgggcgttccggaagagacggaaaagaaagtttcgcatttctgctttggaataag
caggaacttttaaattttgatcagattttaaaaaaccagattcccaataaagctgaattt
ctaaaaatcgttacctacctctactctatttttcaggttgccgaatttgagcttccggaa
aaagtttttcaactaaatatcaacggaatttataatttcacgaaactttccaatgcgaag
atcagaaatgttctcaattttcttcacaatcaggaaataatttatttcaacgaacataaa
agtctttcatcgcttcagctattaatggaagcccatgaaattgatcagttgcccagaaaa
gatgcctattttttagaactgatgcttcgtaccatttccggaattactacacataaagtg
atgttcagcgaacatcaggtaagtggaaaaatcggatccagtgtggaattgatcaaagaa
agattaaaagaacttcaacaaaaaggctatgtggaatatattgacggtgctttatcgagc
attaaatttttaaaaccaagagacgaaagattaaacggatccatttactggaaacttttt
gaacatattcagaaaaataaaatccagaagtgggaagagatgaaattttacatcgaagat
gataaatactgtaaaatgaagctcattttgaactattttggtgaaaaaaatgctaaaaac
tgcggacaatgttcggtatgtgaacgaaacaaacagtcgattttcgggaaaaacatttcc
cagcagatcctcaatttgctgagtaaaagaccggcaacgattgaagaactctctattcag
ctcagctatcattccaaagagaatattctggaaaatttaatttttcttctggataccgga
aaagtaaaaatgctgaatttcagaacgtatgctttggcgtaa
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