Chryseobacterium gambrini: PFY09_09830
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Entry
PFY09_09830 CDS
T08920
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cgam
Chryseobacterium gambrini
Pathway
cgam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cgam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PFY09_09830 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgam03021
]
PFY09_09830 (rpoC)
03400 DNA repair and recombination proteins [BR:
cgam03400
]
PFY09_09830 (rpoC)
Enzymes [BR:
cgam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PFY09_09830 (rpoC)
Transcription machinery [BR:
cgam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PFY09_09830 (rpoC)
DNA repair and recombination proteins [BR:
cgam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PFY09_09830 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WBV54610
LinkDB
All DBs
Position
complement(2171118..2175383)
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKSSRFNKITIGLASPESILQESRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPIAHIWYFRSLPNKIGYL
LGIPSKKLDMIIYYERYVVIQQGIAKKLDGSDFENMEFLTEEEYLDIMETLPIENQYLDD
SDPNKFIAKMGAEAVEELLKRIDLDALSFDLRHKAHNEGSKQRRTEALKRLNVVEALRGA
NTRMINKPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKELSSTEDMKVK
GEGLAFYSPEEAEIAYAEGRVSLNAKVRCRLPVKENGEIVTRLIETTVGRILFNQIVPKQ
VGYINELLTKKSLRNVIGKILADTDFPTTVKFLDAMKDLGYSNAFKGGLSFSLGDIVVPV
EKKQMIADSIGTVDEIRANYNMGLITDTERYNQVIDVWTTTNANLTEMIMGRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPILANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTEDDCGTLRGTEVTALKKNDEIVE
RISERILGRVSLHNIYDPESDELIAEADQVISEALAKRIEEAGLEAVEVRSPLTCEAKKG
ICAKCYGRNLATGKMIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIVAR
RDGIVEMDEVRTITSEDENGNTAEVVVSRSTEFRLVADNESRTPLMVANVPYGSILSVKP
GDKVKKGDVICKWDPYNAVIIAETAGKVEYEDIIQGVSFQLEIDEQTGFEEKVISESRNK
KAVPTLKVVDSKGVEQKAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKIYLVKLSNQILVQEN
DFVRAGSPLSDGSITPDDILRIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKYDFLEENNRVFGLKVVVDAGDSKVFQPGQMITARELRDE
NSKLKREDQALVQVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVAGK
VDDLNGLKENVIVGHRIPAGTGLKEYQNVIVGSKKEFEDLN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaatcaagtagatttaataaaataaccatcggtttagcttcaccg
gaatcgattcttcaggaatcgagaggagaggttcttaaaccggaaactattaactacaga
acgcataaacctgaaagagacggtttgttctgtgaaaaaatctttggtcctgtaaaggat
tacgaatgtgcttgtggtaaatacaagagaattcgttacaaagggatcgtttgtgaccgt
tgtggagtagaagttacagagaaaaaagtacgtagagagagaatcggacatatcaatctg
gtagttccaattgctcacatctggtatttccgttctttaccgaacaaaatcggttacctt
ttaggaattccttccaagaaattggatatgatcatctactacgaaagatatgtagtgatt
cagcagggtattgctaaaaaattagacggttctgatttcgaaaacatggagttcttaact
gaagaagagtaccttgatatcatggaaactcttccgatcgagaaccagtatcttgatgat
tccgatccgaacaaattcatcgctaagatgggagcggaagcggttgaggaattattaaaa
agaatcgatcttgatgcattgtctttcgacctgagacacaaagcacacaacgaaggttca
aaacaaagaagaactgaggctttaaaaagattgaacgttgtagaagcattaagaggagcc
aatacaagaatgatcaataagcctgagtggatgatcatgcgtgtacttccggttatcccg
ccagaactaagaccattggttccgttggatggtggacgtttcgcgacttccgatttaaat
gacctttacagaagagtaatcatcagaaacaaccgtttgaagagattattggagatcaaa
gctcctgaagtaatcttgagaaacgagaagcgtatgcttcaggaatctgtagattcacta
ttcgataatacaagaaaatcttcagccgtaaaatctgaatcaaacagaccattgaaatca
ctttcagattcattgaaagggaagcagggtcgtttccgtcagaacttattaggaaaaagg
gtagattactctgcgcgttccgtaattgttgtaggcccgaacttgcagcttcacgagtgt
ggtattcctaaagatatggctgcggaattgtacaaaccgttcatcatcagaaaactgatt
gaaagaggaattgtaaaaacagtaaaatctgcaaagagaatcatcgacagaaaagagccg
gtagtgtatgatatccttgaaaacgtgatgaaaggtcaccctgttctactgaacagagca
cctacacttcacagactgggtattcaggctttccagcctaagatgatcgaaggtaaggca
atccagcttcaccccttggtaacaacagcattcaacgccgatttcgatggtgaccagatg
gcggtacacttaccgttaggtcctgaagcgatccttgaagctcagttattgatgttaggt
tctcaaaatatcttaaaccctgcaaacggttctccaattacagtaccttctcaggacatg
gttcttggtctttatttcatgaccaaagaattgagttctacagaagatatgaaagtaaaa
ggtgaaggtttggcattctattctcctgaagaagcggaaatcgcttatgcggaaggaaga
gtatctttaaatgctaaagtaagatgtagacttccggttaaagaaaacggagaaatcgta
acaagattaatcgaaactacggtaggtagaatcttattcaaccagattgtaccaaagcag
gtaggatatatcaatgagcttttaacgaagaaatcattgagaaacgttatcggtaaaatt
cttgcagatacagatttccctacaactgtgaagttcctggatgcaatgaaagacttagga
tattcaaacgcattcaaaggaggtctttccttctcattaggagatattgtggttcctgtt
gagaaaaagcagatgattgcagattctatcggaacagtagatgaaattagagccaactat
aacatgggtcttattacagatacagaacgttataaccaggtaatcgacgtttggactaca
accaacgcaaaccttacggagatgattatgggcagaatgaaaaccgatcagggaggtttc
aactctgtatatatgatgcttgactccggagcaaggggttctaaggaacagatccgtcag
ttatcagggatgagaggtttgatggcaaaaccgcagaaagccggttctaccggagcggag
atcatcgaaaacccgattcttgctaactttaaagaaggtctttccatcctagaatacttt
atctctacccacggtgcccgtaaaggtcttgcggataccgctcttaagactgccgatgca
ggttacttaacgagaagattggtagacgttgcacaggacgttatcgttacagaagacgac
tgtggaactttaagaggaacagaagttactgcacttaagaaaaatgatgagatcgttgaa
agaatctctgaaagaatcttaggaagagtttctttacataatatttatgatcctgaaagt
gatgaattaattgctgaagcagatcaggtaatcagtgaggcgttagcgaagagaatcgaa
gaagcaggattagaagcagttgaagttcgttcgccacttacttgtgaagctaaaaaagga
atctgtgcaaaatgctacggtagaaacttagcaacagggaagatgatccacatgggtgaa
gcagtaggtgtaattgcagcgcaatccatcggggaaccgggaactcagcttacgttgaga
accttccaccaagggggtactgcaggaaacgtatcagaaaacccatcaatcgttgcaaga
agagacggtatcgttgaaatggatgaggtaagaacaattacttctgaagatgaaaacggt
aacactgctgaagttgtagtttcccgttcaacagaattcagattagttgctgataacgag
tccagaactccgttaatggtagctaacgtaccttacggttccatattatctgtaaaacca
ggtgataaagtgaagaaaggcgatgtaatctgtaagtgggatccgtataacgcggttatc
attgcagaaactgccggtaaggtagaatatgaagacatcatccaaggggtttcattccaa
ctggagattgacgaacagacaggatttgaagagaaagtaatttccgaatccagaaataag
aaagccgtacctacattgaaggtggtagattctaaaggagttgagcagaaagcatacaac
ttaccggtaggagcccacttaatggtaaatgatggtgaaaaaattaaggctggtaaagtc
ttaatcaaaatcccgagaaaatctgcaaaagcaggggatatcaccggaggtcttccgaga
gttaccgaattattcgaagcaagaaacccttcaaacccggcggtggttacagaaatcgat
ggggtagtttcttacggaaaaatcaagagaggtaaccgagaattgatcgttgaagctaaa
actggagaaagaaaaatttatttggttaaattatccaaccagattttggtacaggagaat
gacttcgtaagagctggttcgccactttctgacggttccattactccggacgatatctta
agaatcaaaggtccaactgcggttcaggaatatttagtaaatgaaattcaggaagtttac
cgtctacagggggtaaaaatcgacgacaagcacttcgaaatcatcgtaagacagatgatg
acaaaagtatctatcgttgatggaggtgatactcagttccttgaaggagctcttgagcat
aaatatgacttcttggaagaaaacaacagagtattcggtcttaaagtagtagtagatgcc
ggagattctaaagtgttccagccgggtcagatgattactgcaagagaattaagagatgag
aattctaaactgaagcgtgaagatcaggctttagttcaggtaagagaagctttaccggct
acggcaacgcctgtattgcagggtattacaagagcagctcttcagacgaaatccttcatg
tctgcagcatcattccaggaaacaactaaggttcttaacgaagcagcagttgcaggtaaa
gtagatgatcttaacggtcttaaagaaaatgtaattgtaggacacagaattcctgcaggt
acaggtcttaaagaataccaaaatgtgatcgtaggttctaaaaaagaattcgaagatctt
aactaa
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