Chryseobacterium gambrini: PFY09_10085
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Entry
PFY09_10085 CDS
T08920
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cgam
Chryseobacterium gambrini
Brite
KEGG Orthology (KO) [BR:
cgam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cgam03009
]
PFY09_10085 (rlmD)
Enzymes [BR:
cgam01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PFY09_10085 (rlmD)
Ribosome biogenesis [BR:
cgam03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PFY09_10085 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Cons_hypoth95
Methyltransf_15
N6_N4_Mtase
TRM5-TYW2_MTfase
Methyltransf_11
MTS
Methyltransf_4
RrnaAD
FtsJ
PCMT
PrmA
UPF0020
Motif
Other DBs
NCBI-ProteinID:
WBV54652
LinkDB
All DBs
Position
complement(2236288..2237700)
Genome browser
AA seq
470 aa
AA seq
DB search
MSRKNKKNLILENIKLLNAGAKGVAIGRTEEGKTVMVSGAIPGDVVNVRVKKAKSKYFEG
EALEVLEKSPYRVEPKCVHFGVCGGCKWQNMSYEKQLSFKQEEVYNNIKRIGGIENFETV
PILGSEEQYFYRNKMEFSFSNSRWLTQYEISSEENFGSRDALGFHIPGMWSKILDLKECF
LQEDPSNAIRLAVKQYAVNEGLDFFDVRNHEGFLRTLMMRQNSKGEWMVLFQLFREEKEN
REKLFGFLLEKFPQIKTLVYAINPKANDSIYDLDINVYFGEGYLMEEMDGLKFKIGPKSF
FQTNYKQALELYRKTLEFADLKGDEVVYDLYTGTGTIAQYVARNAKQVIGIESVQEAIDA
AIEHAELNGLTNTTFYCGDMKDIFNDDFLANHPKADVLITDPPRDGMHQKVVEQILKLSP
EKVVYVSCNSATQARDLALMKEQYDVVKILPVDMFPQTHHVENIALLIKK
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgagcagaaagaataagaaaaatttaattcttgaaaatataaaactcttaaatgcagga
gctaaaggagtggcaataggaagaacggaagaagggaaaacggttatggtttccggagca
attccgggagatgtggtgaatgtaagagtgaaaaaagcaaagtccaaatactttgaaggg
gaagctttggaagttctggaaaaatcgccttacagagtagaaccgaaatgtgttcacttc
ggagtttgcggaggctgcaaatggcagaacatgagctatgaaaagcagctttctttcaaa
caggaagaagtgtacaataatattaaacgaatcggagggattgaaaattttgagaccgtt
ccgattttaggttcggaagagcagtatttttaccgaaataaaatggagttttctttctcc
aattcccgttggcttacccaatacgagatcagttccgaagaaaatttcggaagcagagat
gctttagggtttcatattccggggatgtggagcaaaattctagatcttaaagaatgtttt
cttcaggaagatccttcaaacgcgatccgattggcagtgaaacagtatgctgtaaatgaa
ggcttagacttctttgatgttcgcaatcacgaaggctttttgagaactctaatgatgaga
caaaactcgaaaggcgaatggatggttctttttcagcttttcagagaagaaaaagaaaac
agagaaaaactattcggcttcctgcttgaaaaattcccgcagatcaagactttggtctac
gcgattaatccgaaagccaacgattctatttatgatctggatatcaatgtgtatttcggg
gaaggttatttaatggaagaaatggatggtttaaagtttaaaatcggtccaaaatcattc
tttcagaccaactacaaacaggcgctggaattatacagaaaaacgcttgaatttgcagat
ttaaaaggagatgaagttgtgtatgatctttatacaggtacaggaacaattgctcagtat
gtcgcaagaaatgcaaagcaggtcatcggaatagaatctgtacaggaagccatagatgca
gccattgaacacgcagaactgaacggtcttacgaatacaacgttttattgcggagatatg
aaagacattttcaatgacgactttctggcgaatcatccgaaagcagatgtcctgatcaca
gatcctccaagagacggaatgcaccagaaagtggttgagcagattttaaaactgtctcct
gaaaaagtggtttatgtaagctgtaattctgctacacaggcaagagatttagccttaatg
aaagaacagtatgatgtggtaaagattttaccggtggatatgttcccgcagacgcatcac
gtagaaaatattgctttgctgattaagaaataa
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