Chryseobacterium gambrini: PFY09_10240
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Entry
PFY09_10240 CDS
T08920
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cgam
Chryseobacterium gambrini
Pathway
cgam03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cgam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PFY09_10240 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgam03400
]
PFY09_10240 (ligD)
Enzymes [BR:
cgam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PFY09_10240 (ligD)
DNA repair and recombination proteins [BR:
cgam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PFY09_10240 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
WBV50720
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All DBs
Position
2274063..2275943
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AA seq
626 aa
AA seq
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MLAKPHEGAFDDEDWLFEIKWDGYRAVADLSTDQPLFYSRNGISFFSKFEKISRDFENQI
HHMILDGEIVAYDENGKPNFQWLQQIGDNPDLALTYQVFDILWLNGHSTEELPLIQRKEL
LKEALVETDVIRYCDHVSEKGTAFFSQMKKMKLEGMIAKKANSIYVENHRSSDWLKIKFT
NTEEAIICGFTEPRGSREGFGALILGKYIDGKLTYSGHTGTGFNRELIQEILRKLEKITV
SKSPFEMKPKTNMPVTWTKPELVCEIKYSEITKDGIFRHPVFIALREDKNPEDVENTSEE
TETISQPKMTKMTTSKKIKSSENEQEITLNRHKVKLTNQDKIYFPKDSITKGDVIEYYQS
VAEYILPHLKNRPLSLNRFPNGIEVQNFYQKDAGDSIPDWIKTTKVYSESNDKDIDYIYC
NDKATLAYLNNLGCIDMNPWNSSLPDLDHPDFLVLDLDPSKKNTFDEVIETALQVNEVLE
SVKIDGYCKTSGSTGIHIYIPMGGKYEFDQVKDFAHLLMKQVNEKLPKLTTLERSLQKRD
NKKIYLDYLQNRTGQTLASAYSLRPKEGASVSMPLEWKELKKGLKPTDFNIHNALDRIKE
KGDLFKPVLGKGIDMMKALELLQDAE
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgttggcaaaaccgcatgaaggggcttttgatgatgaagattggctatttgaaatcaag
tgggacggctatcgtgccgttgccgatttaagcaccgatcaacctctcttctactcccga
aatgggatctctttcttttcaaaatttgaaaaaatatcacgggattttgaaaatcagatc
catcatatgattcttgacggtgaaattgttgcctatgacgaaaacggaaaacctaatttc
caatggcttcagcagatcggggacaatccggatctggctctcacctatcaggtttttgat
attttatggcttaatggtcactctaccgaagaacttcctttgattcagcggaaagaactt
ttaaaagaagctttagtggaaaccgatgtcatcagatattgtgatcatgtttcggaaaaa
gggactgcatttttcagtcagatgaaaaagatgaagcttgaagggatgattgccaaaaaa
gccaacagcatttatgtagaaaatcaccgaagttccgactggctgaaaataaaatttacc
aatactgaagaagccattatttgcggttttacagaaccacggggttcgagagaaggtttc
ggagctttgattttaggaaaatatattgatggaaagcttacctacagcggacataccgga
acaggatttaaccgtgaactgattcaggaaattcttcggaaattagaaaaaattactgtc
tcaaaatcacctttcgagatgaaacccaaaaccaatatgccggtaacatggacaaaacct
gaactggtgtgcgaaatcaaatattctgaaattaccaaagacggaattttcagacatcct
gtttttatcgcgctcagagaagacaaaaatcctgaagatgttgaaaatacttccgaagaa
acagaaactatttcccaacccaaaatgactaaaatgacaacttcaaaaaagataaaatcg
tctgaaaacgagcaagaaattaccctaaaccgacataaggtaaaactgaccaatcaggac
aaaatatattttccgaaagatagtattacaaaaggtgatgtcatcgaatattaccagtcg
gttgcagagtatattttacctcatcttaaaaaccgtccgctttcgctaaaccgtttcccg
aacggaatcgaagtgcagaatttttatcagaaagacgcaggtgacagtattccggactgg
ataaaaacaacgaaggtttactcggaatcgaacgataaagacatcgattatatttattgt
aacgacaaagctactttggcttatttaaacaatttaggctgtattgatatgaatccgtgg
aattcttcacttcccgatctcgatcaccctgactttttggttttagaccttgatccttcg
aaaaagaatacgtttgatgaggttattgaaaccgctttgcaggtaaatgaagttttagaa
tctgtaaaaatcgacggatactgcaaaacttccggaagcacgggaattcatatctacatt
ccgatgggtggaaaatacgaatttgatcaggtaaaagattttgcgcaccttttaatgaaa
caagtcaatgaaaaattgccgaaactcacgacactggaaagaagcttacaaaagcgtgac
aacaagaaaatctaccttgattatcttcaaaacagaaccggacagactttagcaagtgct
tacagtttgcgtccaaaagaaggagcttccgtttcgatgcctctggaatggaaagaactg
aaaaaaggcttaaaaccgacagatttcaacattcacaatgctttagacagaattaaagaa
aagggagatttgtttaaacctgttctgggaaagggaattgatatgatgaaggcgttggaa
ttgttgcaggatgctgaatga
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