Chryseobacterium gambrini: PFY09_11180
Help
Entry
PFY09_11180 CDS
T08920
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cgam
Chryseobacterium gambrini
Brite
KEGG Orthology (KO) [BR:
cgam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgam03032
]
PFY09_11180 (topA)
03400 DNA repair and recombination proteins [BR:
cgam03400
]
PFY09_11180 (topA)
Enzymes [BR:
cgam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PFY09_11180 (topA)
DNA replication proteins [BR:
cgam03032
]
Prokaryotic type
DNA Topoisomerases
PFY09_11180 (topA)
DNA repair and recombination proteins [BR:
cgam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PFY09_11180 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
DUF6671
Motif
Other DBs
NCBI-ProteinID:
WBV50894
LinkDB
All DBs
Position
complement(2477963..2480539)
Genome browser
AA seq
858 aa
AA seq
DB search
MSKNLVIVESPAKAKTIQKYLGKDFEVKSSFGHIRDLPKKGMGIDLSTFSPDYEVSADKK
KLVTELKAAVKKAEMVWLASDEDREGEAIAWHLAEELKLKPENRKRIVFHEITKNAILKS
IENPRDIDQNLVNAQQARRVLDRIVGFEMSPVLWKKVKPGLSAGRVQSVAVRLIVEREKE
IREFVPKASFKLDGIFLNKTKQEISAKLKKDFDKEEEAEKFLEQAKTTEFKVLNVETKPG
TRSASAPFTTSTLQQEASSRLGYNVTNTMRLAQRLYEEGYITYMRTDSVNLSQEAIEGAK
KQIISEYGAEYSAPRNYTTKSASAQEAHEAIRPTDFAVKTVGDAQLNRLYQLIYRRTLAS
QMANAKIEKTVIEIGNAKLPQHFEAQGEVIIFDGFLKAYGIVKAEEDDEENNEKLLPKVT
VGEILDYKKITATEKSTRPSARYTEAGLVKKLEELGIGRPSTYAPTIQTIQNREYVDKRE
IEPQTREVVKISLANDTIKKEVLDEKFGGDKNKFVPTDTGEVVSNFLTDNFKEILDYGFT
ARVEESFDEIANGDQKWKEMMTDFYSKFHPRIEDVEENADRATGDRLLGVDPKTGKNVHA
RIGRFGAMIQIGETDDEEKPVFASLMAGQNIATITFEEALELFKLPFDLSEVDGQPVSVG
VGRFGPYVKWGETFISIPKGEDPLSVDQKRAEEIINEKKIADAPIATYKGEPVTKGSGRF
GPFIKYKDIFVNVPKRYDFENLSQSDINELIDAKLEKEANRYIQQWEKEKISIENGRWGP
FIKFGKAMFKIPKKADDTKYEGEELKEISLDEVKKWITDQDPKAFAEKKKPAAKKATTAK
KTTTTKKATTTKKPAAKK
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaaatttagtaatcgttgagtcaccggcaaaagcaaaaactattcaaaagtat
ttaggtaaggatttcgaggtaaaatcaagcttcggacacatccgggatttgcctaaaaaa
ggaatggggattgatctgtcgaccttcagtccggattacgaagtttctgccgacaaaaag
aaattggtaaccgaacttaaagctgccgtgaaaaaagccgaaatggtttggctggcttcc
gatgaagaccgtgaaggagaagcaatcgcatggcatttggcagaagaactgaaactgaag
cccgaaaacagaaaaagaattgttttccatgagattactaaaaatgctattctgaaatct
attgaaaatcccagagatattgatcagaatctcgtaaacgctcaacaggcaagaagagtt
ctcgacaggatcgtaggttttgaaatgtctccggttctctggaaaaaagtaaaaccggga
ttatctgcgggaagagtacagtccgttgccgtaagattaattgtagaaagagaaaaagaa
atccgtgagtttgtgccgaaagcaagtttcaaactggacggaatctttttaaataaaaca
aagcaggaaatttctgcgaagctgaaaaaagattttgataaagaagaagaggctgaaaaa
ttccttgaacaggcaaaaaccaccgagtttaaagttttaaatgttgaaacaaaacccgga
acacgttctgcttctgcaccttttaccacttctacattacagcaggaagcttcttcaaga
ttaggatataatgtaaccaacaccatgcgtcttgcacagagactatacgaagaaggatac
attacctatatgagaaccgactcggtaaacctttctcaggaagcgattgaaggcgcaaaa
aaacaaattatctcagaatacggagcggaatattctgcaccgagaaattataccacaaaa
tcggcttctgcacaggaagctcacgaggcgatccgtcctacagatttcgctgtgaaaaca
gtgggagatgcccagttgaacagattataccagttaatctacaggagaacacttgcttct
cagatggcaaatgctaaaattgagaaaacggtaattgaaatcgggaacgcaaaacttccg
cagcatttcgaagcacagggtgaagtcattattttcgacggtttcctgaaggcttacgga
attgtaaaagcagaggaggatgacgaagaaaacaacgaaaaattgcttccgaaagtaacc
gtaggagaaattttagactataaaaaaataaccgcaaccgaaaaatccacaagaccgagc
gcaagatataccgaagcaggtctggtaaaaaaactggaagaattgggaatcggtcgtcca
tcgacgtatgcaccgaccattcagaccatccagaaccgtgaatatgtggataaaagagag
attgaaccgcaaacaagagaggtggtgaaaatttctttggcaaatgataccattaaaaaa
gaagtcctcgacgaaaaattcggaggagataaaaataaattcgttccaaccgatacaggt
gaagtggtaagtaatttcttgacggataactttaaagaaatcttagattacggctttacg
gcaagagtagaagaaagtttcgacgaaattgcaaacggtgaccagaaatggaaagagatg
atgacggatttctactcgaaattccatccgagaattgaagatgtggaagaaaatgcagac
cgtgcaaccggagaccgacttctgggagtagatccgaaaacagggaaaaatgttcacgca
agaatcggaagattcggggcaatgatccagatcggggaaacagacgatgaagaaaagccg
gttttcgcttcgttaatggcaggacagaatatcgcaaccattacttttgaagaagcactg
gaactgttcaagcttccatttgatttaagtgaagtagacggacagcccgtttctgtggga
gtaggaagattcggaccttatgtgaagtggggcgagacgttcatcagcattcctaaagga
gaagatccgctttctgtagatcagaaacgtgcagaagagatcatcaacgaaaagaaaatc
gcagatgcgccgattgccacttacaaaggtgaaccggtaacgaaaggaagcggaagattc
ggaccattcatcaagtacaaagatatttttgtgaacgttccgaagcgatacgattttgaa
aacctttctcaaagcgacatcaatgaattaattgatgccaaactcgaaaaagaagcgaac
cgatacatccagcaatgggaaaaagaaaagatctccattgaaaacggaagatggggacct
ttcattaaatttggaaaagcgatgttcaagattccgaaaaaagcggatgataccaaatat
gaaggagaggagttaaaagaaatttctcttgatgaggttaaaaaatggattaccgatcag
gatccgaaagcttttgcagagaaaaagaaacctgcggcaaagaaagctacaaccgctaaa
aagaccaccactacaaaaaaggcaactacaacgaaaaagcctgccgcaaaaaagtag
DBGET
integrated database retrieval system
