Chryseobacterium gambrini: PFY09_11890
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Entry
PFY09_11890 CDS
T08920
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cgam
Chryseobacterium gambrini
Brite
KEGG Orthology (KO) [BR:
cgam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cgam03016
]
PFY09_11890
Enzymes [BR:
cgam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PFY09_11890
Transfer RNA biogenesis [BR:
cgam03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PFY09_11890
Prokaryotic type
tRNA splicing ligases
PFY09_11890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WBV51034
LinkDB
All DBs
Position
complement(2625754..2627145)
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AA seq
463 aa
AA seq
DB search
MGNLKLKGKDILKLGYPNNQSVNIALEVMKRNFATKNIHHVKSILKDILVNPENFEKDLT
FGQIAEALLSSKKTEKRMLNTHRATFNIFGNNISDEAKNQLYTALKLPISTQGALMPDAH
SGYGLPIGGVLAVENAVIPYGVGMDIGCRMSLSILDTPISYLEGARDKYEKALAEHTKFG
MYETHKSHVDHEIFDRDTFDLIPVLRRLKGKAIKQMGTSGGGNHFVEFGEVEITEEDQQI
GLPKGKYLGILSHSGSRGLGAEIAQYYSRVAAEQCPLPKEAQQFAWLDLNTHLGLEYWTA
MNLAGDYASACHDDIHRRLVKAVGGRVKAKIENHHNFAWKEIHNGKEVIVHRKGATPANE
NELGMIPGSMTAKGFIVRGKGNPDSLNSASHGAGRAHSRGECRSLFTQNDMKKELKLKNV
TLIGGNAEEAPMAYKDINEVMNAQSELVDILGTFQPRIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatttaaaacttaaaggaaaagatatattaaaattaggctatccgaataaccag
agtgtaaacattgcgctggaagtgatgaaaaggaactttgccaccaaaaacatccatcac
gtaaaatctattctaaaagatattctggtgaatcccgaaaactttgaaaaagatttaacc
ttcggacagattgcggaagctttgctttcatccaagaaaaccgagaaaaggatgctcaat
acacatcgggcgacattcaatattttcggaaacaatatttcagatgaagcaaaaaatcag
ctgtacacagcattgaaactgcctatttcaacacagggagctttaatgcccgatgcgcac
agcgggtacggacttccgatcggaggcgttctcgcggtagaaaatgccgtaattccttac
ggagtcgggatggatattggctgcagaatgagcctcagcattttggatacgcccatttca
tatcttgaaggcgcaagagataaatacgaaaaagcacttgctgaacataccaaattcgga
atgtacgaaacacacaaatctcacgtcgaccacgagattttcgacagagacaccttcgat
ctcattccggttttgagaagattaaaaggaaaagccatcaaacagatgggaacttccggc
ggcggaaaccactttgtggaattcggagaagtggaaattacggaagaagaccaacagatc
gggcttccgaaaggaaaatacctcggaattctttcgcacagcggttcgcgtggattggga
gccgaaattgcccagtattattccagagttgcggcagaacagtgtcctttaccaaaagaa
gctcaacaatttgcatggctggatctgaacacccacctcggattagaatattggaccgca
atgaatcttgcaggagattacgcttctgcgtgtcatgacgatattcacagaagactggta
aaagcagtcggaggaagagtaaaagcaaagatcgaaaaccatcacaattttgcatggaaa
gaaatccacaacggaaaagaagtaatcgttcaccgaaaaggagcaactccggcaaatgaa
aacgaattgggaatgattcccggttccatgacggcaaaaggatttatcgtccgtggaaaa
ggaaatccggattctctgaattccgcttctcacggagccggaagagcccattcaagaggc
gaatgcagaagcctttttactcaaaatgatatgaaaaaagaattaaaattaaagaatgtc
accttaataggcggaaatgcagaagaagcaccgatggcatacaaagacatcaacgaagtg
atgaatgcacaaagtgaactggtggatattctgggaactttccaaccgagaattgtaagg
atggacaggtaa
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