Chryseobacterium gambrini: PFY09_12905
Help
Entry
PFY09_12905 CDS
T08920
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cgam
Chryseobacterium gambrini
Pathway
cgam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFY09_12905 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgam03019
]
PFY09_12905 (rnr)
03016 Transfer RNA biogenesis [BR:
cgam03016
]
PFY09_12905 (rnr)
Enzymes [BR:
cgam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PFY09_12905 (rnr)
Messenger RNA biogenesis [BR:
cgam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PFY09_12905 (rnr)
Transfer RNA biogenesis [BR:
cgam03016
]
Prokaryotic type
tRNA degradation factors
PFY09_12905 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
S1CSD-TOTE-2
OB_RNR_1st
Rrp44_S1
DUF4653
Motif
Other DBs
NCBI-ProteinID:
WBV51231
LinkDB
All DBs
Position
2849365..2851518
Genome browser
AA seq
717 aa
AA seq
DB search
MAKKRKYISQKNEHKLKEIGRLILRFMNENSTKVYNYKQIADGIDYKNPRQRELVIQALH
RLQAAERIKETEKGKYIVNLNIKGTLTGIIDFNQSGNAYVKVEGLEDDIFIHSKNVKDAL
QGDKVLIVTYTYKGKKLEGSVLEVLERTRTEFVGTLQIVPHKDFGFVVCDKKTINTDIFV
PKPKFGGAEDGNKVIVKMTEWRSGDKNPEGEIIQVLGAPGEHETEIHSILAEYGLPYEFP
EEVERDADKIDRSINEEEVAKRWDMRGITTFTIDPKDAKDFDDALSIRKLDNGNWEIGVH
IADVSHYVVPGTILDDEAYQRATSVYLVDRVVPMLPEVLSNDVCSLRPHEDKFTFSAVFE
LNDKAEIKKQWFGRTVIHSDRRFTYEEAQERIEGKDGDFKEEILVLDQLAKIMRQKRIKD
GAITFDRSEVRFNLDENNEPVGVYFKISKDSNHLIEEFMLLANKKVSEFVSLNKRGEISQ
NTFIYRVHDDPDPAKLESLRDFVSTFGYKMDLANTKKVAESLNKLLHDVKGKGEENMIET
LAMRSMSKAVYSTEPIGHYGLGFDYYSHFTSPIRRYPDLIAHRLLQHYLDGGKSPNKADL
EEKAKHCSYMERLAADAERDSIKFMQVKFMEKHLGETFNGVISGVAEFGFWVEIPENGAE
GLIKLRDLTDDSYSYDAKTHAVYGNRHGKKYQLGDQVQIKVVKANLIQKQLDFKIVD
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaaaagaaaatatataagtcagaaaaatgaacataaactaaaggaaatcgga
agactgatccttagatttatgaatgaaaattctacgaaagtctacaactataagcagatt
gcagacggaatagattataagaatccaagacagagagagcttgtgattcaggcactgcac
agattgcaggctgccgaaagaattaaagaaacagaaaaaggaaaatatattgttaacctt
aatatcaaaggaacgttaacaggaattatcgatttcaaccagtccggtaatgcttatgta
aaggtagaaggtcttgaagatgatatttttatccactccaaaaacgtaaaagatgctttg
cagggcgataaagtattaattgtaacctatacctataaaggcaaaaaactggaaggttct
gttctggaagtcttagaaagaacgagaacagaatttgtgggaactttacagatagttcct
cacaaagattttggttttgtggtttgtgataaaaagaccattaatactgatatttttgtt
ccgaaacctaaatttggaggtgcggaagacggcaataaagtgatcgtaaaaatgacggaa
tggagatcgggagataaaaatccggaaggagaaattatccaggttttaggagctccggga
gaacatgaaacggagatccactctattcttgccgaatatggactgccgtacgaattccct
gaagaagtggaaagagatgctgataaaatagacagaagcatcaatgaagaagaagttgca
aaaagatgggatatgcgtggaattacaaccttcaccatcgacccgaaagatgcaaaagat
tttgatgatgctttatccatcagaaaattagacaacggaaactgggaaatcggagttcat
attgcggatgtttcgcattatgtggttccaggaacgattctggatgatgaagcttaccag
agagccacttccgtatatctggtagaccgtgttgtaccgatgcttccggaagttttaagt
aatgatgtctgttcgctgcgtccgcacgaagataaatttactttttcagccgtttttgag
ctgaatgacaaagctgaaatcaaaaaacagtggttcggaagaacggtaattcattcagac
agacgatttacgtacgaagaagcgcaggaaagaattgaaggaaaagacggtgattttaaa
gaagaaattctggttttagatcaattggcgaaaatcatgcgtcagaaaagaatcaaagac
ggagcgattactttcgacagaagtgaagtacggttcaatctggatgaaaacaacgaaccg
gtgggagtttactttaaaataagcaaagattccaatcatttgatcgaagaatttatgctg
ttggcgaataagaaagtatcggaatttgtttctctgaacaagagaggggaaatttcgcag
aatacttttatttacagggttcacgacgatccggatcctgcaaaactggaatctctgaga
gattttgtgtcgactttcggatataaaatggacttggcgaataccaaaaaagtagcggaa
tctttaaacaaattactgcacgatgtaaaaggtaaaggcgaagaaaatatgatcgaaact
ctggcgatgcgaagcatgagcaaggcggtttattctacagaacctatcggtcactacgga
ttgggatttgattattacagccacttcacctctcctatccgtcgttatccggatttaatt
gcacacagattgttgcagcattatcttgatggtggaaaatctccgaacaaggcagatctt
gaagaaaaagcaaaacactgcagttatatggaaagacttgcggcagatgcggaaagagat
tctataaaattcatgcaggtgaaatttatggagaaacatttgggagaaactttcaacggg
gttatttcaggcgtggcggaattcggtttctgggtagaaattcctgaaaacggtgcggaa
ggattaatcaaattaagagatttaaccgacgattcttactcttatgatgcaaaaactcac
gccgtgtacggaaacagacatggtaaaaaataccagttgggagatcaggttcagatcaaa
gtggttaaagcaaatcttattcaaaaacaattggatttcaagattgtggattag
DBGET
integrated database retrieval system
