Chryseobacterium gambrini: PFY09_14540
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Entry
PFY09_14540 CDS
T08920
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cgam
Chryseobacterium gambrini
Pathway
cgam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PFY09_14540 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgam03400
]
PFY09_14540 (mfd)
Enzymes [BR:
cgam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFY09_14540 (mfd)
DNA repair and recombination proteins [BR:
cgam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PFY09_14540 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
UB2H
Motif
Other DBs
NCBI-ProteinID:
WBV51547
LinkDB
All DBs
Position
3183866..3187237
Genome browser
AA seq
1123 aa
AA seq
DB search
MQLKTINEKFLPELLLKEFGKEIFFQLENNQHISVKGNAGSSVSIFVAELFLTQKKTILY
ILDDKEDALYANTEMEDLLGKEKVLYFPATHLEPYQVEKTQNANLVLRTEVINKVTSGKS
PRVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLNHYHFQQADFVSEPGEF
SVRGGIVDVFSFSNEKPYRITFFGNEVESIKTFDIETQLSIDKVNEFQLVSNMNFTVTGS
RVSLLQLLPKESFVISKNGIVGMQRLKAFYEKSLEKYETLSKDIAHRSPQELFISDQEFL
FDYKKFKTVDFGSVPIEGLIELSEIKIDQTSQPSFHKNFELLIEDIEEKQNAGFETWISF
STEKQKERLESIFEELEHQLPFKSFKSELHEGFVDNDHKILVYTDHQIFDRYQRYKAKNT
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKYNGPEGREIVLSKLGSPTWKSLKQKTKARVKQLAFDLIKLYAQRKSAKGFA
YTPDSYLQNELEASFLYEDTPDQEKATIDVKKDMEADTVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVAYVNRFRTAKQKSETLAALKDG
KVDIIIGTHQLASSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKADVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVETHLIGFSEEILRDAVSYELQRDGQVYFINNRIENL
KDIAGLIQRLVPDARVITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANT
IFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDEEFENLFENEEER
NKLFKTTKDVNIDTDLELMLPDWYISNTEERLLLYQKLAEIDSEESLTKFESELIDRFGE
LPKEAVNLLKSVSLKWLAADIGFEKIVMKNGVFLGYFPGNPQDKFYQTNKFRTIINYLTK
NPKEAQLKEKTGKEGNQLMMRKDKVGNVDEVNDLLKIILKSEV
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgcaattaaaaaccatcaacgaaaaatttcttcccgagctgcttcttaaagaattcgga
aaagagattttctttcaactggaaaataatcaacatatttctgtaaaaggaaacgcagga
tcttcggtttctatttttgttgccgagctgtttcttacgcagaagaaaaccattctttat
attcttgatgataaggaagatgcattgtatgccaatacggaaatggaagatctgctggga
aaagaaaaagtgctttattttcccgcgactcatctggagccgtatcaggttgaaaaaacg
cagaatgccaatcttgtcctgagaaccgaagttattaataaagttacatccggaaaatct
cctcgcgttatcgttgcgtatgcaggagcgctgtctgaaaaggttttaaaaaaggaagat
tttaaggcgatttcgcatcatataaaagtaggcgatcagctggattttgattttgtggat
gagctgctcaatcattaccatttccaacaggcggattttgtttcagagccgggagaattt
tctgtaagagggggaattgtggatgttttctcgttttccaatgaaaagccatacaggatc
acatttttcggtaacgaagtggaaagtattaaaacctttgatatcgaaacccagctttcg
attgataaggtaaacgaatttcagttggtttccaatatgaattttacggtgacgggaagt
agggtttctttgttgcaactgttgccgaaagaaagttttgtaatttccaagaacggaatt
gtgggaatgcaaaggctgaaagctttctacgaaaaatcattagaaaaatatgaaacatta
agcaaagatattgcgcacagatctccgcaggagctgtttatttcagatcaggaatttctt
tttgattataaaaaattcaaaaccgtagattttggaagcgttcctattgaaggactgatt
gaattatccgaaataaaaattgatcagacttcgcagccatcttttcataaaaattttgaa
ttactgattgaagatatcgaggagaagcagaatgcaggttttgaaacatggatctcattc
tctaccgaaaaacagaaagaaaggctggaatctatttttgaagagcttgaacaccagctt
ccgttcaaaagttttaaatctgaacttcatgaaggttttgtggataacgatcataaaatt
ctggtctacaccgatcaccagattttcgaccgttaccagagatacaaggctaaaaataca
tttgccaaatcggagcagcttaccctgaaagatttaatgtctttgaaaattggcgattat
atcgctcacatcgaccacggaatcggaaaattcatgggactggtaaaggtgaataacgac
ggaaaaattcaggaatgttttaaactgacgtataaaaacggagacttattatatgtaagc
attcattctcttcataaaatttcgaaatacaacggtccggaaggaagagaaattgtgctg
agcaaacttggatcgccaacctggaaatctttaaagcagaaaacaaaagcaagggtaaaa
caattggcttttgatttaataaaattatacgctcaacgaaaatcggcaaaaggttttgcg
tacactcccgattcttatctgcagaatgagcttgaagcaagtttcctttacgaagatact
ccggatcaggaaaaggcaaccatcgacgttaaaaaggacatggaagcagatacggtgatg
gatcgtctcgtttgtggagatgtcggttttggtaaaacggaagttgcgattcgtgccgcg
ttcaaagcggcgacagatggaaagcaggttgctgttttggttcccaccacgattctggcg
tttcagcattacagaagttttaaagaaaggctgaaagattttccggtgaatgtagcgtat
gtaaaccgtttcagaacagccaagcagaaatctgaaacgcttgcggctttaaaagatggg
aaagtagacattattataggaacacatcagttggcaagcagctctgtaaagtttaaagat
ttgggattgctgattattgatgaagaacataagttcggagtttccgtaaaagataagctg
aaaactttaaaagctgatgttgatactttaacattaacggcaacgccaattccaagaacc
cttcagttttctttgatggcggcaagagatttatccgttattaaaactcctccgccaaac
agacagcctgttgaaacacatttgattggctttagtgaagagattcttcgtgatgccgtt
tcttatgaacttcagcgtgacgggcaggtttatttcatcaacaacaggattgaaaacctg
aaagatattgcaggactgattcaaagactggttcctgatgcgagagtgattacagggcac
ggacagatggaaggaaaacaactggagaagaacgttctggattttatggaaggaaaatat
gatgttctggtttctacaaccattgtggaaagtggagtagacgttccgaatgcgaacacc
atatttattaatgatgcacagcgtttcgggatggcggatcttcaccagatgagaggccgt
gtcgggcgaagcaacagaaaagcattctgttatcttattacgccgccttatgatatgatg
acttccgatgccagaaaacgtctggaagccattgaacagttttcggatctgggaagcggt
ttccaaattgccatgaaagatcttgaaatccgtggagccggagatttactgggagcggaa
cagagcgggtttattaatgaaatggggtttgaaacttaccaaaaactgatgcaggaagct
ttggaagagctgaaagacgatgaggaatttgaaaatcttttcgaaaatgaagaagaaagg
aacaaattgtttaaaacgacaaaagacgttaatattgataccgatctggagctgatgttg
ccggactggtacatttcaaatactgaagaaagattactgctttaccagaaacttgcggaa
attgatagcgaagaaagtctgacgaagtttgaatctgaactgatcgaccgctttggggaa
ctgccgaaagaagctgtaaatctattaaaaagtgtaagcttaaaatggcttgctgcagat
ataggttttgaaaagattgtcatgaaaaacggtgtgtttctgggatattttccgggaaat
cctcaggataagttttatcagaccaataaatttagaaccatcattaattatttaacgaaa
aatcctaaggaagcacagcttaaggaaaagaccggaaaggaaggcaatcagctgatgatg
agaaaggataaagtagggaatgtggatgaggtaaatgatcttctgaaaataattctgaag
agcgaagtgtaa
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