Chryseobacterium gambrini: PFY09_17080
Help
Entry
PFY09_17080 CDS
T08920
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
cgam
Chryseobacterium gambrini
Pathway
cgam00040
Pentose and glucuronate interconversions
cgam01100
Metabolic pathways
cgam02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
cgam00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
PFY09_17080
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PFY09_17080
Enzymes [BR:
cgam01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
PFY09_17080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pectate_lyase_5
Motif
Other DBs
NCBI-ProteinID:
WBV52029
LinkDB
All DBs
Position
complement(3725162..3726280)
Genome browser
AA seq
372 aa
AA seq
DB search
MKKTFKAVFAAVALCSVFALTGCGQEDIKSDLSENNSDLNMRSELVASAVIPLANCVAPG
WASQNGGTTGGGTAAETTVTNYAQLKAAIENSAVKVIKVTGTITVSARLSFQDQTGKTIY
GTSGAKLVSTDQTKDGSGIINIKRCNNIIIRNLIFEGPGAYDTDGWDNAILDDCRNVWID
HCEFRDGVDGNFDVKNKSDFVTVSYTKFHYLKPPKAGGSGGTDDHRFSNLIGSSDGATTD
AGKLNVTFVRCWWAPGCRERMPRVRYGKIHILNSYFNSSVSNKCIAAGVQANIRVDGNVF
ENVNEPINLMSGYTAVTVTSNNTFTNVTGNKLGNGTAFTPPYTIPTLSLSSVKSDVTANA
GATLSGNICNSF
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaacatttaaagctgtttttgctgcggtagcgctctgttctgtttttgcctta
accggatgcggacaggaagacattaaatccgatttatccgaaaacaacagtgacctgaac
atgagaagtgaactggttgcgagtgcggtaattccgttagccaattgtgttgcaccggga
tgggcttctcaaaacggtggaactacaggaggcggaactgctgctgaaactaccgttacc
aactacgcccagttaaaagctgctatcgaaaattcagccgtaaaagtgattaaagtaacc
ggaacgattacggtttcagcacgtctttcatttcaggatcagacaggaaaaaccatctac
ggaacaagcggtgcgaaactggtttctacggatcagaccaaagatggttcaggaatcatc
aatattaaaagatgcaacaatatcatcatcagaaatctgatctttgaaggtcccggagcg
tatgatacagatggttgggacaatgctattctggacgattgccgaaatgtgtggatcgat
cattgtgaattcagagacggggtagacggaaattttgatgttaaaaataaatctgatttt
gtaacggtatcctacacgaaatttcattatttaaaacctccaaaagcgggaggatccgga
ggaacagacgaccaccgattctccaacctcatcggttcgagcgatggcgccacaacggat
gcaggaaaactgaatgtaacttttgttcgttgctggtgggctccgggatgcagagaacgt
atgccgagagtgcgctacggaaaaatccatatcctgaacagctatttcaacagttctgta
agcaacaaatgtattgcagcaggagttcaggctaatatccgagtagacggaaatgttttt
gaaaatgtaaacgagccgattaacctaatgagcggttatacggcagtaacggttacttcc
aacaatacttttaccaacgttacgggtaataagctaggaaacggaacagctttcacgcct
ccttatacaattccaacgctttctctgtcatccgtaaaatctgatgttacggcaaatgcg
ggagctacattatccggaaatatctgcaattctttttaa
DBGET
integrated database retrieval system