Chryseobacterium gambrini: PFY09_18245
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Entry
PFY09_18245 CDS
T08920
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cgam
Chryseobacterium gambrini
Pathway
cgam03420
Nucleotide excision repair
cgam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PFY09_18245
03430 Mismatch repair
PFY09_18245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgam03400
]
PFY09_18245
Enzymes [BR:
cgam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PFY09_18245
DNA repair and recombination proteins [BR:
cgam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PFY09_18245
MMR (mismatch excision repair)
Other MMR factors
PFY09_18245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Viral_helicase1
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
UCH
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
WBV52230
LinkDB
All DBs
Position
3957545..3959878
Genome browser
AA seq
777 aa
AA seq
DB search
MEDYLKGLNESQYEAVTTLQGPLMVLAGAGSGKTRVLTMRIAHLITNGIDPFNILALTFT
NKAAKEMKERIAKVVGQSNARSLWMGTFHSVFARILRSEAHYLGYPSNFTIYDQQDALNV
IKKVLKDMNIDADLYKPKKVQARISTYKNNLITVKAYFNNPELMEADEKANMKFIGQIYQ
RYVEQCFKNGSMDFDDLLLKTNELLTRFPEVLAKYQDRFRYILVDEYQDTNHSQYLIVKA
LASKFENICVVGDDAQSIYSFRGANIYNILNFKKDYPDAMTVALEQNYRSTQNIVNAANV
VIAKNLQQFKKNVFSENEEGEKIKVYRSLSDADEANFVAGNIWETRNREQRKYSDFAILY
RTNSQTRAFEDALRRKNIPYKVYGGLSFYQRKEVKDLIAYLRLLVNENDSEALMRIINYP
ARGIGETTQNKLVVFADAQNVAVSKVLDNLPMYAPHLGLNNGVLNKLNDFWSMIKAFQVL
LKTETAYSVAMEVAKRSGLIKFLKDDQTPEGISRVENVQELMNSMQGFIEEQMQLEDGDP
SLPNFLENIALSADTQDKNNEEDMVSLMTIHLSKGLEFPVVHLVGLEENLFPSFMSSSTR
EDLEEERRLFYVALTRAEKQVFFSYAVSRFQWGKITDAEPSRFLSEIDEEYIEFVNPAIE
KRFINNSGIKSNIFDEHPSEMRSFKKVEKKTIERSDSSKPIAEPRKLKPVSTAKIINPSG
ASSQDIEVGDKVRHDRFGIGEVTFLDGTDPQNIKAKVVFQHEGEKNLILKYAKLTKI
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggaggattatctgaaaggactgaatgaatcacaatacgaagccgttaccacattacag
ggaccattaatggttctcgcaggagcgggttccggaaaaacgcgtgtacttaccatgcgt
attgcccatctcattaccaacggaatagatccttttaatattttggcgcttacctttacc
aataaggcagcaaaagaaatgaaagaacgtattgcaaaagtagtgggacagagcaatgca
agaagtctctggatgggaactttccactctgtttttgcaagaattctgagaagtgaggca
cattatctcggctatccttccaactttaccatttacgatcaacaggacgcattaaatgtc
atcaaaaaagtgttgaaagacatgaatattgatgccgatctgtataaacccaaaaaagtt
caggcaagaatttctacctacaaaaataacctcatcaccgtaaaagcttatttcaacaat
cctgaattgatggaagccgatgaaaaagccaatatgaaattcatcgggcagatttaccag
cggtatgtagagcagtgcttcaaaaacggatcgatggattttgacgatttgctgttaaaa
accaacgaattgttaacccgtttccctgaagtgttagcaaaatatcaggacagattcaga
tatattcttgtggatgagtatcaggatacgaaccattctcagtatcttatcgttaaagct
ttagcctcaaaatttgaaaatatttgtgttgtgggagatgatgcacagtccatttattcc
ttccgtggtgcgaatatctacaacattttgaactttaaaaaagactatccggatgcaatg
acggtagctttggagcagaattaccgttctacccagaatattgtaaatgctgcgaatgta
gtgatcgcgaaaaaccttcagcagttcaagaaaaatgttttcagcgaaaatgaagaagga
gaaaaaatcaaagtataccgttctctttccgatgccgatgaagcgaatttcgtagccgga
aacatctgggagaccagaaaccgtgagcagagaaaatacagcgattttgccattttatac
agaaccaactctcagacgcgtgctttcgaagatgcgctgagaagaaaaaatattccttac
aaagtctacggaggtctctctttctatcagagaaaagaagtaaaagatctcatcgcttat
ctgagacttttagtcaatgaaaacgattctgaagcgttgatgagaatcatcaactatccg
gcaagaggaattggagaaactacccagaataaattggttgtttttgcagatgcacagaat
gttgccgtttcaaaagttttggataatttaccgatgtatgcgccacatttaggcttaaac
aacggtgttttaaacaaactgaacgacttctggtcgatgatcaaagcatttcaggtactg
ctgaaaacggaaacagcatacagcgttgcgatggaagtggcgaaacgaagcggactgatt
aaatttttaaaagacgatcagactcccgaaggaatttcccgtgtagaaaacgttcaggaa
ttaatgaactcaatgcagggattcattgaagaacagatgcagctggaagacggagatccg
agcttaccgaatttccttgaaaacattgccctttctgccgatacgcaggataaaaacaat
gaagaggatatggtatcgttaatgacgatccacctttcaaaaggtcttgaatttccggtt
gtacatttggtggggcttgaagaaaaccttttcccgagcttcatgagttcttccacaaga
gaagatctggaagaagaaagacgtctcttctatgttgctttaacgagagccgaaaagcag
gtgtttttctcttatgccgtatcacgtttccagtgggggaaaattaccgatgcggaacct
tcaagatttttaagtgaaattgatgaagaatatatcgagtttgtaaatcctgcgattgaa
aaacgttttatcaacaattcgggcatcaaatccaatatttttgatgaacatccatcggaa
atgagaagtttcaaaaaagtggaaaagaaaaccatcgaaagaagcgacagctcaaaaccg
attgcagaaccacgcaaactgaaacctgtaagtacggcaaaaatcatcaatccgagcgga
gcttcttctcaggatattgaagtgggcgataaagtaagacacgaccgtttcggaatcgga
gaagtaactttcctcgacggaactgatcctcagaatatcaaagccaaagtagtctttcag
catgaaggcgagaaaaatcttatcctgaaatacgcgaaactaacaaagatttaa
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