Chryseobacterium gambrini: PFY09_18660
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Entry
PFY09_18660 CDS
T08920
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
cgam
Chryseobacterium gambrini
Pathway
cgam03030
DNA replication
cgam03410
Base excision repair
cgam03420
Nucleotide excision repair
cgam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cgam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFY09_18660 (polA)
03410 Base excision repair
PFY09_18660 (polA)
03420 Nucleotide excision repair
PFY09_18660 (polA)
03440 Homologous recombination
PFY09_18660 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgam03032
]
PFY09_18660 (polA)
03400 DNA repair and recombination proteins [BR:
cgam03400
]
PFY09_18660 (polA)
Enzymes [BR:
cgam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PFY09_18660 (polA)
DNA replication proteins [BR:
cgam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PFY09_18660 (polA)
DNA repair and recombination proteins [BR:
cgam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PFY09_18660 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PFY09_18660 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH_2
DUF2202
ACS_CODH_B_C
DUF1198
SIN1_PH
Motif
Other DBs
NCBI-ProteinID:
WBV52311
LinkDB
All DBs
Position
4049442..4052279
Genome browser
AA seq
945 aa
AA seq
DB search
MDATQDKRLFLIDAYAMIFRGYYALIRNPRLTSKGLDTSAIFGFTNSLIELIRREKPTHL
AVVFDVGEASIRTEDFSDYKANRSETPEAIKNAIPYIHRILEAMHIPILGVPGYEADDVI
GTIACKAEKEGYVTFMVTPDKDFAQLVTDKIKIYKPGLKGGDIEILGVEEVKAKYEIEDP
KQVIDFLAMMGDAVDNIPGLEGVGEKTAMKFLKEFGSIENLLANTNQLKGKLKEKVEASA
ERGILSKKLATIICDAPVEFHQEQYDLETPDFEKVKEVFEEIEFRRLYENLYRAFAPAAA
PNVVTEVEVTVTETTPQQKVAQAVGQLDLFATYEDLDQATSTKSTIEQNDHLYQFVDNPK
AQKILVNNLLKQKVVCFDTETTSLNELEAELVGMSFSYKKGLAYYVPLSEDQGEVLQTLE
IFRPFFEKEDLVKVAHNLKFDYKILKRYDITVKGAMFDTMIAHYLLNPDGRHGMDYLSEV
YLNYKPVSIETIIGKKGKKQGNFRDADLRTQTDYAAEDADVTFQLYELFAPQLKKENLED
LFFSIEMPLMEVLAKMELEGISLDEKWLAQESIDLENDLRQLESKIFEISGEEFNMNSPK
QLGEILFEKMQLDPKAKKTKTGQYATSEDVLQKLSSKHEIIKHILEYRTYQKLKSTYVDA
LPSQIEKTDNRVHTNFSQTTAATGRLASVNPNLQNIPIRTLRGQQIRGAFVSAEGKKIIS
ADYSQIELRLIAEISGEDNMIKAFQNGEDIHASTAAKLFNIPLEEVSKTQRSQAKTVNFG
IIYGQGAFALAEQTGLSRTEAKQMIEAYFETYPKLKEYMAEQVRKAREVGYVETLLGRKR
HLKDINSNNFVVRGHAERNAVNAPVQGSAADVVKMAMIKIQKELEKEKLQTKMLLQVHDE
LIFEAPIDEVEVAKNIIKMEMENAVETQVPLLIEVGVGNNWLEAH
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggacgcaacacaagataaaaggttatttctcatcgatgcttatgcgatgattttcaga
ggatattacgcattaatcagaaatccgaggcttacaagtaaaggtctggacacttctgcc
atcttcggatttacgaattctttaattgaactgatcagaagagaaaaaccaacccatttg
gcagtggtttttgatgtaggagaggcaagtataagaacggaagacttctcagattataaa
gcgaaccgaagcgaaacgcctgaagccattaaaaatgcgattccatacattcacaggatt
ttagaggcaatgcacattcccattttgggagttccgggatatgaagcagatgatgtaatc
ggaaccattgcctgcaaagcagaaaaagaaggctacgtcacattcatggtaacgccggat
aaagactttgcacagcttgtaaccgataaaatcaaaatttataaaccgggacttaaaggc
ggcgatattgaaattttaggcgttgaagaagttaaagccaaatacgaaatcgaagatccg
aaacaggtaatcgactttcttgcgatgatgggagatgcagtcgacaatattcccggactg
gaaggcgttggtgaaaaaacagccatgaaattcctgaaagaattcggaagcatagaaaat
cttttggccaacaccaatcagcttaaaggaaagctgaaagaaaaagtggaagcttcagcc
gaaagaggaattttatccaaaaaattagcgaccattatctgcgatgctcctgtagaattt
catcaggaacaatacgatctggaaacgcctgattttgagaaagtaaaagaagtttttgaa
gaaatagaattccggagattatacgaaaacctttatcgtgcttttgctccggctgcagcg
ccaaatgtagttacagaagtagaagtaaccgttacggaaacaactcctcagcaaaaagtt
gcacaggcagtaggacagttggatctttttgccacttatgaagatctcgatcaggcaaca
tccacaaaatcgacgattgagcagaatgatcacctttatcagtttgtggataatccgaaa
gcacagaaaattttagtcaataatttattaaaacaaaaagtagtctgcttcgataccgaa
accacctctcttaatgaactggaagccgaattggtcgggatgagtttttcctacaaaaaa
ggattggcgtattatgttcctttatccgaagatcagggagaagttctgcagacgctggaa
attttcagaccgtttttcgagaaagaagatctggtaaaagtagcgcacaacttaaaattc
gattataaaatccttaaaagatacgatattacggtaaaaggagccatgtttgataccatg
attgcgcattaccttttaaatccggacggaagacacgggatggattatctttcggaagtt
tacttaaattacaaacctgtttccatcgaaaccatcatcggtaaaaaaggaaaaaaacaa
ggcaatttccgtgatgcggatctcagaacccagaccgattacgctgcagaagatgcagac
gtaaccttccagttgtacgaattgtttgcgccacagcttaaaaaagaaaatttagaagac
ttattcttcagtatagaaatgcctttgatggaagttttggcaaaaatggaactggaagga
atttctcttgacgaaaaatggctggctcaggaaagtattgatcttgagaatgatctaaga
caactcgaatccaaaatatttgagatttcaggagaagaatttaatatgaattctccgaag
cagctgggtgaaattttatttgaaaaaatgcagcttgatccgaaagcgaaaaagacaaaa
accggacagtatgcaacttcggaagatgttcttcaaaaactgtcttcaaaacatgaaatt
atcaagcatattctggaatacagaacctatcagaaattaaaatcaacctacgttgatgca
ttaccgtctcagattgaaaaaacagacaaccgtgttcataccaatttttcgcaaactacg
gctgcaacaggtcgtttggcgagtgtaaacccgaatttgcagaatattccgatccgaact
cttagaggtcagcaaattcgtggcgcgtttgtgtctgcagaaggaaagaaaattatttct
gccgattattcccagatcgaattgcgtctgattgccgaaatttccggggaagacaatatg
attaaagcgttccagaacggggaagatattcacgcttctacggcggcaaaactgttcaat
attccgttggaagaagtttccaaaacacagagaagtcaggcaaaaaccgtaaacttcgga
attatttacggacagggcgcttttgcattggcagagcagaccggactttccagaacggaa
gccaagcaaatgatcgaagcctattttgaaacctatccgaaactgaaagaatacatggcg
gaacaggtaagaaaagcccgagaagtcggttatgtggaaacacttttaggcagaaaacgt
catttgaaagacatcaattccaataattttgtggttcgtggtcacgcggaacgaaatgcg
gtaaatgcgcctgttcagggaagcgcggcagatgtcgtaaaaatggcaatgattaaaatt
cagaaagaactggaaaaggaaaagctgcagacaaaaatgctgcttcaggtacatgacgaa
ttaatttttgaagccccgattgatgaggtggaagttgccaaaaacatcattaaaatggaa
atggaaaacgcagttgaaacgcaggttccgctattgattgaggttggagtagggaataac
tggctggaagcgcattaa
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