Chryseobacterium gambrini: PFY09_19000
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Entry
PFY09_19000 CDS
T08920
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cgam
Chryseobacterium gambrini
Pathway
cgam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFY09_19000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgam03019
]
PFY09_19000
Enzymes [BR:
cgam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFY09_19000
Messenger RNA biogenesis [BR:
cgam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFY09_19000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
NACHT
AAA_19
UvrD-helicase
P-loop_SecA
Cas3-like_C_2
HEM4
Flavi_DEAD
AAA_22
AAA_7
CheB_methylest
Phage_integrase
Motif
Other DBs
NCBI-ProteinID:
WBV52367
LinkDB
All DBs
Position
4122226..4123533
Genome browser
AA seq
435 aa
AA seq
DB search
MNFTDLQLIDPISKAIQEQGYTNPTPIQERSIPEILKGKDFLGCAQTGTGKTAAFAIPIL
QNLAQNKFPNKNIKALILTPTRELAIQIEENINAYGKYLPLKHLVIFGGVKQGNQEAALK
KGVDILVATPGRLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPQKRQT
LFFSATMPSEIQKLADSILNNPVKVEVTPVSSTAETIKQSVYFVEKDNKLNLLTHILKND
ISDSVLVFARTKHGADKIARKLQKDDITTEAIHGNKSQNARQNALSNFKSGKTRVLVATD
IAARGIDIDELKYVVNFELSDVSETYVHRIGRTGRAGAEGTSISFVDGLDLLNLRNTEKL
IGMKIPVVKNHPFHTDDLVAQKRDSNNKPVPAGGEKPKQARGNSSKFSRNKSKPDNGAAS
VGFKKPKNKNFTRKK
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttacagacttacaattaatagatcctatttcaaaagcaattcaggaacaagga
tataccaacccgaccccgattcaggaaagatctattccggaaattttaaaaggtaaagat
tttctgggttgcgcacagacagggacaggaaaaacggcagcttttgcgattcctatcctt
cagaatcttgctcagaacaaatttccaaacaaaaatataaaagctttaatcttaacgcct
acaagagaactggcaatccagattgaagaaaacatcaatgcttacggaaaatatttgcct
ttaaagcatctcgtaatttttggaggtgtaaagcagggaaatcaggaagctgcgctgaaa
aaaggagttgatattctggtcgcgacaccgggaagacttctggattttattgctcaggga
atcatcagcttaaaaaatcttgaaatttttgtactggacgaagctgacagaatgctggat
atgggttttgtgcacgatgtgaaaagaattattaaacttttgcctcaaaaaaggcagact
ttgttcttctctgcaaccatgccttcagaaatacagaaactggcagattctattcttaat
aatcctgtaaaagtagaagttactccggtttcatctaccgcagaaaccattaaacagtcg
gtttactttgtagagaaggataataaactgaatcttttaacgcatattttaaagaacgat
atttcagattctgtcttggtttttgcaagaacgaaacacggtgcggataaaattgcgaga
aaactacagaaagatgatattacaacagaggctattcacgggaataaatcccagaacgcg
cgtcagaatgctttaagtaattttaaatccggaaaaacaagggttctggttgcgacagac
attgcagcgagagggattgatattgatgaacttaaatatgtcgttaatttcgagctttcc
gatgtttctgaaacgtatgttcacagaatcggaagaacgggtagagcaggagcggaagga
acttctatttcatttgtagacggtctggatcttctgaatttgcgaaatacggagaaactg
atcggaatgaaaattcctgtggtaaaaaatcatccgtttcatacagacgatctggttgct
cagaaaagagattcgaacaacaagccagttcctgcaggaggggaaaaaccgaaacaggca
agaggaaattcttcaaaattcagccgaaataagtcaaagccggataacggagcggcatcg
gttggttttaaaaagcctaagaataaaaatttcaccagaaagaaataa
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