Chryseobacterium gambrini: PFY09_19050
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Entry
PFY09_19050 CDS
T08920
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cgam
Chryseobacterium gambrini
Pathway
cgam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFY09_19050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgam03019
]
PFY09_19050
03009 Ribosome biogenesis [BR:
cgam03009
]
PFY09_19050
Enzymes [BR:
cgam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFY09_19050
Messenger RNA biogenesis [BR:
cgam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PFY09_19050
Ribosome biogenesis [BR:
cgam03009
]
Prokaryotic type
rRNA helicases
PFY09_19050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WBV52377
LinkDB
All DBs
Position
complement(4129891..4131585)
Genome browser
AA seq
564 aa
AA seq
DB search
MNLFTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDETSRKIQLLVLCPTRELCLQIAKDIKNYSKYMANIKTTAVYGGSSIMEQMRSLK
DKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQT
FLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNIKHEFYVAGYRQKKEALKRLIDSN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKLKQIKSA
TKIEITEGKIPTGDDIIKAQVGGVFESLFEIHEDFFEFDDSLIPDLSAFTKEELAHKLLQ
FQLKDLAMYYKDRHDLVEQKLSSRDDDRGSRRDRDRGRDRDRGERGERSDRRERGAKPRR
KNENMVRFFFNLGKKDQLKKLDVLDIINKATSNGKSKKRAEIGDIEILEKFSFFEVEKSF
KGDLLSNISTMKFRGKDMRAEEAN
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggagaccaatttaagtcctgatattcttaaggcaattggcgaactg
ggttacgaaagcccgacagaaatccaaaaacagactatcccttttattctttcagatatt
cgcgacttgatcgcacttgcgcagacggggacaggcaaaacagcagcgttttcgcttccg
attttggatatgattgacgaaacgagtcgcaaaatccaacttttggtgctttgtccgacg
cgggaattatgtcttcagattgctaaagacataaaaaattattctaagtacatggcgaac
atcaaaactactgcagtttatggtggaagcagcattatggaacaaatgagatctctgaag
gacaaaccgcagattattgtgggaactccgggaagagtaatcgatttgattaacagaaaa
gcgctagacttttctgctattcactggttggttttggatgaagcagacgaaatgctttcc
atgggtttcaaagacgagttggaaacaattttaagcgaaacaccggaaacaaaacagact
ttccttttctctgcaacaatgaacaaggaagtggaaagaatttccaaaaattatttaacg
aagcctcacagaatttcggtaggttctattaacgaagttaagaagaacattaagcacgaa
ttttatgtagcaggataccgtcagaaaaaagaagcattaaaaagattaattgattccaac
ccgaatcagtactctattattttctgcagaacaagaatggaaactcaggaagttgccgat
ttcttaatgcagaacggttatgcagcagatgcgcttcacggagatctttctcaggcgcag
agagatacggtaatgaagaaattcagactgaaaaacatcgatattcttgtagcgacagac
gttgcagcgagaggtctggatgtaaattctcttacccacgttatccactattctttaccg
gatgatcctgaagtattcgtacacagaagcggaagaacaggaagagcaggaaaagacgga
atttcaatgtctttaatcaagcctgaagaaagcagaaaattaaagcagatcaaatcggct
acgaaaattgaaatcacggaaggtaaaattcctaccggtgacgatattatcaaagctcag
gtaggcggagttttcgaaagtcttttcgaaattcacgaagatttctttgaatttgacgat
tctctgattcctgatttatcagcattcactaaagaagaactggcgcacaaactgcttcag
ttccaactaaaagatcttgcaatgtactacaaagacagacatgatcttgtggagcagaaa
ctaagcagcagagatgacgacagaggttccagaagagaccgtgacagaggaagagaccgc
gacagaggtgaacgtggagaaagaagcgacagaagagagcgtggtgcaaaaccaagaaga
aagaacgaaaatatggttcgatttttcttcaatcttggtaaaaaagatcagttgaaaaaa
cttgacgttttagacatcatcaataaagcgacatcgaacggaaaaagcaaaaaaagagct
gagatcggagacatcgaaattttagagaaattctctttcttcgaagttgaaaaatctttc
aaaggagatcttttgagcaatatttctacaatgaaattcagaggtaaggatatgagagct
gaagaggctaactaa
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