KEGG   Clarias gariepinus (North African catfish): 128505414
Entry
128505414         CDS       T10780                                 
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
  KO
K20179  vacuolar protein sorting-associated protein 11
Organism
cgar  Clarias gariepinus (North African catfish)
Pathway
cgar04140  Autophagy - animal
cgar04148  Efferocytosis
cgar05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    128505414 (vps11)
   04148 Efferocytosis
    128505414 (vps11)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    128505414 (vps11)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cgar04131]
    128505414 (vps11)
Membrane trafficking [BR:cgar04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    128505414 (vps11)
   Hops complex
    128505414 (vps11)
SSDB
Motif
Pfam: PEP5_VPS11_N TPR_PEP5_VPS11 VPS11_N VPS11_C Clathrin TPR_Vps41 zf-C3HC4_2 zf-RING_2 zf-rbx1 zf-C3HC4 zf-C3H2C3 WD40_Prp19 TPR_GEMI5 zf-RING_5 zf-ANAPC11 ADIP Beta-prop_EML_2 zf-RING-like zf-RING_UBOX zf-C3HC4_3 Kbp-5
Other DBs
NCBI-GeneID: 128505414
NCBI-ProteinID: XP_053331785
LinkDB
Position
17:16743704..16755097
AA seq 925 aa
MAAFLQWRRFVFFDKEAVKDPSENGNFALPKGISACDSGRGHVVLGDMDGQIWFLSRSLQ
LTSFQAYKLRVTHLYQLKQHSILVSVGQDEHGINPLVKVWNTDKRDSGSPLCTRIFPAIP
GNKPAEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLTLHEGSCPVTGLAFRQ
AGKVTHLFVATLEKVQSYTLSMKEYPRLELDTHGCALRCSALTDPSQDSQFIVAGDDCVY
LYQPDERGPCFAFDGHKILTHWHRGYLLLVSQDIKSPNKPDFGPRQSPTEKQVLTIYDLD
NKFIAYSAAFDDIIDVLAEWGSFYVLTRDGKMFMLQEKDTQTKLEMLFKKNLFVMAINLA
KSQHLDNDGLSEIFRQYGDHLYIKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIHNLT
AYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSSESEVHFDVEIAIKVLRQAGY
HSHAVFLAEKHSHHEWYLKIQLEDLKNYQEALRYIGRLPFEQAETNMKHYGKTLMLHVPE
GTTVLLKRLCTNYQPTQDSSDRDSVDKLAMDKASSEEFIPIFANNPRELRAFLEHMIHVE
PLSPQGVYDTLLELRLQDWAHETDPKNKTELQGAALSLLRSENTVFDKALVLCQMHNFKE
GVLYLYEKGKLYQQIMHYHMQNEEYSKVVEACKRFGNQEVCLWEQALGYFARKEEDCKAY
ISEVLQHIDQNNLMPPLLVVQTLAHNSTATLSVIKDYLINKLQRESKQIEEDERKIQQYR
EETAHLRAEIQELSTSAKIFQKTKCSMCNSPLELPSVHFLCGHSFHQHCFESYAESESEC
PTCTPENRKVMDMLRAQEQKRDLHDHFNGQLRSSNDGFSVVADYFGRGVFNKLTLITDPP
GSKTGAGNLEADLQRDLLIHTKRNA
NT seq 2778 nt   +upstreamnt  +downstreamnt
atggctgcgttcttgcagtggaggcgctttgtattttttgataaagaagcggtgaaagac
ccgagtgagaatggaaactttgcgttgccgaaaggcatatcggcttgtgattcaggccgg
ggacatgttgttctcggagatatggacggtcagatctggtttttatccagatcattgcag
ctgacttccttccaggcttataaactgcgggtgacacatctgtaccagctgaaacaacac
agcatcctggtgtcagtgggccaggatgaacatggcattaacccactggttaaggtgtgg
aacacagataagagagacagcggcagtcctttgtgcactcgtatatttccagccattcct
ggaaacaaacctgcagaagtgtcctgtctcagtgtacatgagaatctcaatttcatggcc
ataggcttcacagatggcagtgtagttttgactaaaggtgacatcaccagggacaggcac
agtaaaaccctcacccttcatgagggaagctgtcctgtcacaggtctggctttccgccag
gcaggaaaagtcacccacttgtttgtggctactcttgagaaagtgcagagttacacgttg
tctatgaaggagtatcctcgtttggagctagacacccacggctgcgctttgcgctgctct
gccctcacggacccttcccaggactcgcagtttattgtagccggagatgactgtgtgtat
ctgtaccagcctgatgaaagaggaccctgctttgcctttgatggacataaaatcctgacg
cactggcatcggggctacttacttctggtttcccaagacatcaagtcacctaacaagcct
gactttggtcctagacagtctccaacagaaaagcaagtcttgaccatttacgacctggac
aataaattcatcgcctacagtgcagcatttgatgacattatagacgtcctggcagagtgg
ggctcgttttacgtcttgacaagagatggaaagatgtttatgctgcaagagaaggatacc
cagactaagcttgagatgctttttaagaagaacctgtttgtgatggcgattaaccttgca
aagagccaacatctggataatgatggcctttctgagatatttcggcagtatggagaccat
ctgtacatcaaaggggaccatgatggagctatccaacagtatattcgaactattgggaaa
ctggaaccgtcgtacgtcatccgtaagttcctggatgctcagagaattcacaaccttact
gcatacctgcaggcacttcacaggcaatcgctggccaacgcagatcacaccacgctgctt
ctcaactgctacaccaaactgaaggacagctccaagctggaggagttcattaagagcagc
gagagtgaggtgcattttgatgtggagatagccataaaggtgctgcgccaggctgggtac
catagccacgctgttttcctggcagagaaacactcccatcatgagtggtacttaaagatt
cagctggaggatttgaagaactaccaggaggctcttcgctatattgggcgtctgccgttt
gagcaggctgagactaatatgaagcactatgggaaaactctgatgcttcatgttcccgag
ggcaccactgtgctgctaaaaaggctttgtaccaattaccaacccacccaggactcctct
gaccgggacagtgtggacaaattagcaatggacaaggccagttcagaagaatttatccct
atctttgctaataatccacgagagctgcgagcatttcttgagcacatgattcatgtggaa
ccattgtcaccgcaaggggtgtatgatacactgcttgagcttcggctgcaggactgggct
catgaaacagatcctaagaataagacagaactgcagggggcagcattgtcactgctgagg
agtgaaaacacagtgttcgataaggcgctggttctctgccaaatgcacaactttaaagaa
ggagtgctctacctgtatgagaagggcaaactgtaccagcagatcatgcactaccacatg
cagaatgaggagtattctaaagtggtggaggcgtgcaagcgctttggcaatcaggaagtt
tgtctgtgggaacaggctttgggctactttgcgcggaaagaagaagactgcaaggcttac
attagcgaggtcttgcaacacatagatcagaacaacctcatgccaccacttctggtggta
cagacactcgcccataactccaccgcgacgctgtcagtaattaaagattatctaattaac
aaactgcaaagggagagcaagcagattgaagaagatgagagaaagattcagcagtaccgt
gaggagactgcacacctgcgtgctgaaatccaggaactcagcaccagtgcaaagattttt
caaaagacaaagtgcagcatgtgcaatagccctctcgagctgccatcagtacatttcctt
tgcggtcactcttttcatcagcactgcttcgaaagctatgcagagagcgagagtgagtgc
ccgacatgcactcctgaaaacagaaaggtgatggacatgttacgggcacaggagcagaaa
cgggatctacatgaccactttaatggacagttgaggagttctaacgacggtttctcagtg
gtggcagactactttggccgtggagttttcaacaaactgactttgataacagatcctcct
gggagtaagacaggggctgggaatttagaagctgatctacagagagaccttctcattcat
accaaaagaaatgcttaa

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