Clarias gariepinus (North African catfish): 128505454
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Entry
128505454 CDS
T10780
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
128505454 (rabgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgar04131
]
128505454 (rabgef1)
Membrane trafficking [BR:
cgar04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
128505454 (rabgef1)
Protein recycling
Other Rab GTPase associated proteins
128505454 (rabgef1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
RecG_N
Motif
Other DBs
NCBI-GeneID:
128505454
NCBI-ProteinID:
XP_053331854
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All DBs
Position
17:699834..708856
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AA seq
485 aa
AA seq
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MSQRSERRGIHVDQSELLCKKGCGYYGNAAWQGLCSKCWREEYQRARQKQIQDDWELAEK
LQREEDAAYASSHGSQAPPSLTPFSKFEEKKTNEKTRKVTTVKKFFSPSSRSSSKKESHE
AKSHSPSIVRQSSVETDQVSREFVEFLKTLKPGREIHKQSRAFVESMGNKKDLGADELSE
CVQDFYQNMSDRLLTHFKGSSEKVERVMDQVEKYIMTRLYKSVFCPETTDDEKKDLSTQH
RIRALHWVTIQMLCVPVDEEIPEAADSVVKAITDIIEMDSKRVPRDKLACITSCSKHIFH
SIRVTKKEPASADDFLPTLIYIVLKANPPRLQSNIQYITRFCNPSRLMSGEDGYYFTNLC
CAVAFIEKLDAHSLNLSVEDFERYMCGSMGGAGDASPCRTPKSSSPPWPLKLLSALQERQ
QQVLEEARGLEAELQHWQEGVAREVQDILDKYPLEIKRHAAQTIDSENEENDRLPPPLQP
QVFAG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcggtccgagcggcgagggatccatgtggatcaatctgagctgctgtgtaag
aaaggatgcggttactatggcaacgcggcatggcaggggctgtgctctaagtgctggagg
gaggagtaccagcgcgcccgccagaaacagatccaggacgactgggaactcgctgagaag
ttacagagggaggaggacgcagcgtacgccagcagtcatggctcacaggctccgccctct
ctcacacccttctccaagtttgaggagaagaagaccaacgagaaaacacgcaaagtgacc
accgtgaagaagttcttcagcccctcgtcacgcagcagctccaagaaagagagccacgag
gcgaaatcccacagtccatcgattgtgcgtcagtcgagtgtagagacggaccaggtgtcg
agggagtttgtggaattcctcaagactctgaaaccaggacgagaaattcacaagcagagc
cgagcctttgtggagagcatgggcaataaaaaggacctgggtgctgacgagctctccgag
tgtgtgcaggatttctaccagaacatgtctgaccgtctcctcactcactttaaaggttcc
tctgagaaggtggagcgagtaatggaccaggtggagaagtacatcatgacgcgcctctat
aagagtgtgttctgtcctgagaccaccgacgacgagaagaaagatctgagtacgcagcac
aggatccgggcgttacactgggtgaccatccagatgctgtgtgttcctgtggatgaggaa
attccagaagcagctgatagtgtagtgaaggccattacagatataatcgagatggactcg
aagcgcgtgccgagagacaagctggcctgcatcaccagctgcagcaaacacatcttccac
tccatcagggtgaccaagaaggagccggcgtcggccgatgacttcctccccacgctcatc
tacatcgtgctgaaggccaacccgccgcggctgcagtccaacatccagtacatcacgcgc
ttctgtaaccccagccgtctgatgagcggagaggacggctactacttcaccaacctgtgc
tgcgccgtggcgttcatcgagaagctggacgctcactccctcaacctgagcgtggaggat
ttcgagcgttacatgtgcggcagcatgggcggagccggtgacgcttccccgtgcaggacg
cccaagtcctcgtcccccccgtggcctctcaagctgctctcggctctgcaggaacgccag
cagcaggttctggaggaggcgcgagggctggaggcggagctccagcactggcaagagggc
gtggcccgcgaggtgcaggacatcctcgacaaataccctctggagatcaagaggcacgcg
gcgcaaaccatcgactctgagaacgaggagaatgacaggctgcctccgcccctgcagcct
caagtgttcgctggttag
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