Clarias gariepinus (North African catfish): 128505693
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Entry
128505693 CDS
T10780
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128505693 (rc3h2)
04121 Ubiquitin system [BR:
cgar04121
]
128505693 (rc3h2)
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
128505693 (rc3h2)
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128505693 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-CCCH
zf-RING_UBOX
zf-RING_5
zf-RING_2
zf_CCCH_4
zf-C3HC4_4
zf-CCCH_UNK
zf-C3HC4_3
zf-CCCH_4
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
128505693
NCBI-ProteinID:
XP_053332213
LinkDB
All DBs
Position
17:29442847..29466304
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AA seq
1032 aa
AA seq
DB search
MPVQAAQWTEFLSCPICLNEFNAGGHKPISLGCSHTVCKTCLHKLHRKACPFDQTAISID
IELLPVNRALLLLVGAQVPESHSVSLDSDEDLQHYDVCRTSVEELALYLKPITGGKGVVS
PSASTLSRPMQRKLVTLVNCQLVEEEGRVRALRAARSLGERTITELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYDALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNILRAPLELLAGI
DQNLDAAIPSWEELEAAMLAVKVVVHGLVEFIQNYSKKSHETFQSQPNSKYKTSMCRDLR
QQGTCPRGVNCTFAHTQDELEKYRMRNKKVCSGTRPSLLPKVGAVKSSAVDLGVGEQEGV
ASESSSPTRLVPRGGEQDEQDEVMKEMTDGLTTTCQDLKTGSPPKSPALGPADPSQLLKP
HRGHHEVTYFPDQRSVYELPSCQTGNFFPPSLSNHHKPYLPRFPRSSPTSDSSAPPPLAP
PYPDPPLPSRLGLSPYPPSPSYPPLPHSHPHGHGVYAPVYDSRRLWRPQLYHRHDGRSNS
LPLEVLHSSIYHPPLRERFNSLDSAYCSASSRRAALQREAYNRAALGSEDFYSLRQDQWS
HQHHGPGRGTQHSPVFTVDLCSERMENSVCVNCKCGGADAPLSRYSPWSCGAVGPFDSEP
LYSHTCSQHPQDGECTAKNWLHVSEPYRRVKDEDPIIPFGEGPIISKWGAISRSSRTDHH
TTEPVQATATHGRTATTTLINFRDYGAHVGQGECRWSPCGFESTCSGVLDSEQRRSSFST
SGKRGAEFLVRDRAESEPDRDIELELCALHMEDSEPAGIPPQVSLEPRCDNRLSSVFGDG
AGSARAQQSLAEHIVDAHLLKKMAFRKSASPGALNAGGLAMSGLVMKTGSPRPPPGDPVG
PSPGSEMILNGN
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaggcggcacagtggacggagttcctgtcctgtcccatctgcctaaatgag
tttaacgcaggcggacacaaacccatcagcctgggctgctcacacaccgtgtgtaagacc
tgccttcacaaactgcaccgtaaagcctgtcccttcgaccagaccgccattagcatcgac
atcgagctgctgcccgtcaaccgtgccctactgctgctggtgggggcgcaggttcctgaa
agccacagtgtgtctctggacagcgatgaagacttgcagcattatgacgtgtgcaggacg
tctgtggaagagttggcgctgtaccttaagcccatcaccggtgggaaaggcgtggtctct
ccgagtgcaagcacgctcagtcggcccatgcagaggaaactggtgaccctggtgaactgc
cagctggtggaggaggaggggcgcgtgagggcgctgcgggccgctcgctctctgggagaa
cgcaccatcaccgagctcatcctgcagcaccagaacccacagcagctctccgccaacctg
tgggctgccgtcagggcgcgggggtgtcagttcctcgggcctgcgatgcaggaggacgcc
ctgaagctcgtgctcctggccctggaggacggctcggcgctctcccgcaaggtcctggtg
ctcttcgtggtccagaagctggaagctcggttccctcaggcctccaagacgagcatcggt
catgtggtgcagctgctgtaccgagcgtcctgctttaaggtgacgaagcgtgatgaagac
tcctccctgatgcagctgaaggaggagtttcggacgtacgatgctttgagacgtgaacac
gatgcccagatcgtccacatcgccatggaggcggggcttcgcatctcacctgagcagtgg
tcatctctgctgtacggcgacctcgtccacaaatcacacatgcagtccatcatagacaag
ctccagtccccagaatcctttgcgaagagcgtgcaggagctgacgatcgtcctgcagaga
accggagacccggccaacctcaacatcctccgagctccgctagaactcctggctggcatt
gatcagaatctggacgcagccatcccctcgtgggaggagcttgaggcagcgatgctggcg
gttaaggttgtggtccatggtctcgttgagttcatccagaattacagcaaaaaaagccat
gaaacgtttcagtctcaacccaacagtaaatataagaccagtatgtgcagagacctgcgg
cagcaaggaacctgcccacggggtgtcaactgcaccttcgcccacacccaggacgagctg
gaaaagtaccgaatgaggaataagaaggtctgctcaggaaccaggccgtccctcctgccc
aaggtgggggcagttaaatcctcagctgtggacttgggtgttggtgagcaggagggcgtg
gcctcagagagctcctcccctactcgccttgtgcccagaggaggagagcaggatgagcag
gatgaagtgatgaaggagatgactgacggattaacgaccacttgtcaagacctgaaaacg
ggttctcccccgaagagcccagcgttaggacctgcagacccctctcagctcctcaaacca
cacaggggtcaccacgaggtcacctactttcctgaccagagatctgtatacgagctgccg
tcctgccagaccggtaattttttccctccttctctgtcgaaccatcacaaaccctacctg
cctcgctttccccgctccagccccacctctgactcctcagccccgcctcctctggctcct
ccctaccctgacccgcccctcccgtctcgtttgggcctgtctccttatcccccgtcccct
tcttatccccccctccctcactctcacccccacggtcacggcgtctacgctcccgtctac
gacagtcggcgtctctggaggcctcagttgtaccacaggcacgacggccggagcaactcg
ctccccctggaggtgctgcactcgtccatttatcatccccctctccgggagcgctttaac
tcgctcgacagcgcttactgcagcgcctccagcaggagagccgccctgcagcgggaggcg
tacaaccgagcggctctgggctctgaggatttctactctcttcgtcaggatcagtggtcg
caccagcatcacggcccgggccgagggacgcagcattcccctgtctttactgtggatctg
tgctctgagcgtatggagaacagcgtgtgtgtgaactgtaaatgtggaggtgcagacgca
cctctcagtcgttactcgccgtggtcgtgtggcgccgtcggcccgttcgactcggagccc
ctttactcgcacacttgctcccagcacccgcaggacggtgagtgtacagctaaaaactgg
ctgcatgtttctgagccgtacagacgcgtgaaggacgaggaccccatcatcccgttcggt
gagggtcccatcatctccaagtggggtgccatttcacgctcgtctcgaaccgaccaccac
accaccgaacctgtccaggccacggccacgcacggacgcaccgccaccaccacgctcatc
aacttcagagattacggcgctcatgtgggacagggcgagtgtcggtggagcccgtgtggc
tttgagtcgacgtgctccggggtcctcgacagtgagcagagacggagctccttcagcacc
tctgggaagcgtggtgccgagttcttggtccgagacagagcggagagtgaaccggaccgg
gacatcgagctggagctgtgtgcgctacacatggaggactcagaaccagcagggatcccg
cctcaggtgtctttggagccgcggtgtgacaatcgcctctccagtgtgttcggcgatgga
gcaggaagcgcgcgggcgcagcagtcgttagctgagcacattgtggacgctcatttactg
aagaagatggcgtttcggaagtcggcctctcctggggccctgaatgctggaggtctcgcc
atgagtggtctggtgatgaagacaggttctccaagacctcctccaggagacccagtcgga
ccgagcccgggatccgagatgatcctgaacgggaactaa
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integrated database retrieval system
