Clarias gariepinus (North African catfish): 128505736
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Entry
128505736 CDS
T10780
Symbol
vps36
Name
(RefSeq) vacuolar protein-sorting-associated protein 36
KO
K12190
ESCRT-II complex subunit VPS36
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
128505736 (vps36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgar04131
]
128505736 (vps36)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgar04147
]
128505736 (vps36)
Membrane trafficking [BR:
cgar04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
128505736 (vps36)
Exosome [BR:
cgar04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128505736 (vps36)
Exosomal proteins of colorectal cancer cells
128505736 (vps36)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAP30
Vps36_ESCRT-II
Xre-like-HTH
DUF1351
MA3
GRAM
Laminin_II
Flu_M1_C
Motif
Other DBs
NCBI-GeneID:
128505736
NCBI-ProteinID:
XP_053332281
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All DBs
Position
17:18315010..18324961
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AA seq
381 aa
AA seq
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MDRFMWTNGLLEMNETLVIQQRGVRLYDGDDKAKLDVGVVLLSTHRLIWRDLKNHECCIC
IPLSQIIFFEEQAAGIGKSAKIVIHLHPVPANKEPGPYQNSKFSYIKLSFKEHGQIEFYR
RLTEEMTQRRWENTPVSQPITPTALKAGKTRAVGIVGIERKLEEKRKETDKNISEAFEDL
SKLMEKAKEMVELSRSIANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETHGSGTHY
HMQLAKQLGDMLQAPLEERGGMMALTEVYCLVNRARGMELLSPEDMVNACRLFESLKLPL
RLRVFDSGVMVVQLQSHSEEEMIASAIDNVSDKGSLTAEEFAKLLGLSVLLAKERLLLAE
KMGHLCRDDSVEGLRFYPNLF
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atggatcgttttatgtggacaaatggactccttgaaatgaatgaaaccttagtaatccag
caaaggggtgttcgactatatgacggagacgacaaggcgaaacttgatgtaggagtggtc
ctcttaagcacacatcgattaatttggagggatctaaagaatcatgagtgctgtatatgt
ataccgttgtctcagatcatattctttgaggagcaggctgcaggaattggaaagagtgcc
aagattgtcattcacctgcatccagttcctgctaataaagagccggggccataccagaat
agcaagttctcctacattaagttatcctttaaggaacatggacaaattgaattttacaga
cgtctgacagaagaaatgactcaaaggaggtgggagaatacgccagtgtcacaacccatt
acaccaacagcactgaaggcaggaaaaacccgtgcagtagggattgttggcattgagcgg
aagctggaggagaagaggaaagagacagataaaaacatttcagaggcatttgaagatctc
agcaagcttatggagaaggctaaagagatggttgagctttccagatccattgccaacaaa
atcaaagacaaacagggggacatcactgaggacgagaccatccgcttcaagtcatatttg
ttgagcatgggcattgccaaccccgtaaccagggaaacgcatggctcaggcacacactac
cacatgcagcttgctaaacagttaggagacatgctgcaggcaccactggaggagcgagga
ggtatgatggccctcacagaggtttactgtctagtgaaccgggcacgcgggatggagctt
ctttctcctgaggacatggtcaatgcctgcaggttgtttgagtctttgaaacttcctctc
aggttgcgagtgtttgacagtggcgtaatggtggttcagcttcagtctcacagtgaagaa
gagatgattgcatctgctatcgataatgtgtctgataagggctccttaactgcagaggag
tttgctaaacttttaggactgtctgttcttcttgcaaaagaaagactgcttctggctgag
aaaatggggcatctatgcagagatgactctgtggaaggcctgcgcttttatcccaacctt
ttctga
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