Clarias gariepinus (North African catfish): 128505770
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Entry
128505770 CDS
T10780
Symbol
lamb1a
Name
(RefSeq) laminin subunit beta-1a
KO
K05636
laminin, beta 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04510
Focal adhesion
cgar04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128505770 (lamb1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128505770 (lamb1a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Alanine_zipper
ATG17_like
Motif
Other DBs
NCBI-GeneID:
128505770
NCBI-ProteinID:
XP_053332351
LinkDB
All DBs
Position
2:25513636..25537018
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AA seq
1782 aa
AA seq
DB search
MILHLAALLCLGARSLAELPERGDVCTEGSCYPATGDLLIGRAHQLSATSTCGLEKTEPF
CIVSHLQEEKKCFVCDSRRSYNDDAHTTSHRIENVVTTFAPNRLKTWWQSENGVENVTIQ
LNLEAEFHFTHLIMTFKTFRPAAMVIERSADFGKTWQVYRYFAYDCESSFSLISRGPMKK
VDDVICDSRYSDIEPSTEGEVIFRVLDPAFRIEDPYSPRIQNMLKITNLRVKFTKLHTLG
DNLLDSRIEIKEKYYYAIYDMVVRGNCFCYGHASECAPIDGAGEVVDGMVHGHCMCNHNT
MGLNCELCQDFYHDLPWRPAEGRNTNACKKCNCNHHSTSCHFDMAVYQASGNISGGVCND
CQHNTMGHHCEQCKPFFYQHPERHIRDPNICESCDCDPVGSLNGGICDALTDVSLGLIAG
QCRCKPNVEGERCDQCKQGHYGLSDDPLGCKACTCNSVGTIPGGSPCDTFSGNCYCKRLV
MGRDCDQCLPQHWGLSNDMDGCRPCDCDAGGALNNDCSPETGYCQCREHMSGRRCDQVES
GFYFVALDHYVYEAEDANFGPGVTVVQRPYPQDRNPTWTGIGFVNVPEGAYLEFSINNIP
FSMEYDILIRYEPQLPEQWEEVLMTVIRPHVITADSRCANTMPDDDNQMVSLHPGSRYVV
LPRPVCFEEGLNYTVRLSLPRYSTNSDIQSPYTLIDSLVLMPHCKNLDIFSGSVSEGGDL
VTNSAWDTFQRYRCLENSQSVVKTPMPDICKNYIFSVSALLHQGAKACQCDPQGSLSTVC
DPNGGQCQCRPNVVGRNCDKCAPSTFLFGPQGCRPCECDPQGSVHAFCHEATGQCECIPG
AYGRQCDRCLPGHWGFPNCRPCTCNGHAEQCDPQTGQCLDCREHTTGHNCERCLPEFYGD
PVLGSGDHCRPCMCPDGPGSSRQFAGACYKSHDSHLVHCVCKQGYKGARCDECSPGYYGN
PHEAGGECRACQCSNNIDMMVPGSCDARTGICLKCLYHTEGESCSHCKLGYYGDALTQDC
RRCVCNHIGTRQDTCPSVGECNCDQNNGQCQCLPNVVGQHCDLCAPDTWNMASGRGCEAC
DCDPNHSSSTACNEISGQCMCKPGFGGRTCRECRELFWGNPEVKCHACDCDPRGIAEQQC
NKATGHCVCVEGVSGPRCDTCARGYFGEFPHCERCHQCFAEWDVIVGELTNQTHRLVQKV
NTIKSNGLTGPYKDTINNMERSANSIRELLAQNPATQPLTEIQSLLEQATSLMTEMNEKL
NQTEELLSQISENSTDSKLETLSEEAQKLQRTVKDLQDQVEFMKNSDVRGALDSVKKHMQ
ESEAAEARVNASISDPESLVEQSASLRNYTESMMNETKEEFQRKQDEHTKVLDDLAGQLE
TLDLSELSENTCGSRAGSEACADSPCGGLGCLDAEGNRKCGGEGCNGLTTLAHNAWQKAK
DFDQDIVSAMEEVDKLSKMVSEAKVKADEAKLNAQEVLQKTNATKQRVDNSNEELRRLIK
QIRDFLTQEGADLESIEAVANEVLQMQMPTTPAQLQNLTADIRERVSSLSDVADILNQSA
ADIERAETLLEQARKARKEASDVKSTAELVQEALDQAEKAQTAVTEALKQATNDIKGTQA
LIVSVESETADSEFKLSNATQRLLQLEKDVALLKEKALNTATTVEMTEKDTDSATELAEQ
IKKDLDTELKDKYGTVEGLISEKAQGVADAKKRAEMLQEEAKELLLQASKKLQLLKDLEK
SYDENQKTLEDKANQLVDLEKAVKELLQEISQKATVYSTCLF
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atgatattacacctcgcagcccttttgtgtttaggggcgcggtcgctggccgagctgcct
gaacgtggggatgtgtgcacggagggaagctgttatcctgccactggagacctgcttatt
ggcagagctcatcagctctcagccacttccacctgtggtctggagaaaaccgaacctttc
tgtattgtcagtcaccttcaggaagagaagaaatgctttgtgtgcgattctaggaggtcc
tacaatgacgacgcacatacaacaagccacagaattgaaaatgtagtgaccacgtttgct
cctaaccgactaaagacttggtggcagtcagaaaatggggtggaaaatgtgaccatccag
ctgaacctggaagcagagttccacttcacccatctcatcatgaccttcaagaccttccgg
ccagctgccatggtgatcgagcgctctgctgactttggaaagacatggcaggtgtaccgt
tactttgcctatgactgcgagtcctccttttcattgatctctcgggggcccatgaagaag
gtggatgatgtcatttgtgactctcgctattctgatatcgagccatctacagagggagaa
gtcatctttcgtgtattggacccggcattcaggatcgaggatccctacagcccaaggatc
caaaatatgctgaagattactaatctgagagtgaagtttactaagctgcatactctgggg
gacaacctgctggactcacgtattgagatcaaggagaagtactattatgccatttacgac
atggtggtgaggggcaactgcttctgttacggccacgcttctgagtgcgcgcccattgat
ggagctggagaggtggtggatggaatggtccatggccactgcatgtgtaaccacaacacc
atggggctgaactgtgagctctgtcaggacttctaccatgacctgccctggaggcctgca
gagggacgtaacaccaatgcctgtaaaaaatgcaactgcaatcaccacagtacctcctgc
cattttgacatggccgtgtaccaggcgtcaggtaacataagcggaggagtgtgtaatgac
tgccagcacaacactatgggccaccattgtgagcagtgcaagccctttttctaccagcat
cctgagaggcacattcgtgaccccaacatctgcgagtcctgtgactgtgatcccgttggt
tctctaaacggtggcatctgtgacgcgctgacagatgtttctcttggactgatcgcagga
cagtgtcgttgtaagcccaatgtagagggggagcgttgtgaccagtgcaaacaaggccat
tatggccttagtgatgatcctctgggatgtaaagcgtgcacctgtaattctgtggggaca
atccctggcggaagcccttgtgacacattttcaggaaactgctactgcaagcgtttagtt
atggggcgagactgtgaccagtgcttgcctcagcactgggggctcagcaatgacatggat
ggctgcaggccatgtgattgtgatgctggaggcgctctcaataatgattgttctccagag
acagggtactgtcaatgtagagagcacatgtcaggcagacgttgtgaccaggtggagtcc
ggtttttactttgttgctctggaccattatgtctacgaggcagaagatgctaactttgga
cctggtgtaacagtcgtgcagagaccatatcctcaggaccgtaatccgacctggactggt
attggctttgtgaatgttccagaaggagcttatctggaattcagcattaacaatatcccc
ttttccatggaatatgacatccttattcgctatgaaccccagcttccagaacagtgggag
gaagtactgatgactgtcatcaggcctcatgtcatcactgctgacagccgctgtgccaac
accatgccagatgatgacaaccaaatggtgtccttacaccctggctccagatatgtagtg
ttacccaggccagtatgttttgaggaggggttgaactacacagtgcgtctgagtcttcct
cgctactctaccaatagtgacatccagtccccatacacactcattgactcacttgttttg
atgccacactgtaagaatctggatattttctccggttccgtatcagagggaggtgacttg
gtgaccaacagtgcatgggacaccttccagcgctatcggtgcttagagaacagccagtct
gtggtgaagacccccatgcctgacatctgcaagaactacatcttcagtgtgtctgctcta
ctgcatcaaggagcgaaagcatgtcagtgtgaccctcagggatctcttagtacggtgtgt
gatccgaacggtggccagtgccaatgccgtcccaacgtggtgggcagaaactgtgacaag
tgcgctccttctacgttcctgtttggacctcagggatgcagaccatgtgagtgcgatcca
cagggttcagtgcatgcgttctgccatgaggccactggtcagtgtgaatgtattcccgga
gcgtacggacgtcagtgtgaccgctgtctccctggacactggggctttcccaactgccgg
ccatgtacttgtaatggacatgctgagcagtgcgacccccaaactgggcagtgcttagac
tgtagggagcacaccacaggacacaactgtgagagatgtttgccagagttttatggtgac
cctgtcctgggctctggagaccactgccgaccctgtatgtgtcccgatggtcctgggagc
agtcgacagtttgctggggcatgttataagagccatgactcacacctggtgcattgtgta
tgcaaacagggctataaaggtgcaaggtgtgatgagtgttcaccaggctattatggaaac
ccccatgaggctggtggagagtgtcgtgcctgccagtgtagtaacaacattgatatgatg
gtcccaggatcatgtgatgcacgcacaggcatctgcctcaaatgtctgtaccacaccgag
ggcgagagctgcagccactgcaagctgggttattatggtgacgcccttacccaggactgc
aggcgatgtgtgtgtaaccacatcggcactagacaggacacttgtccatccgtcggtgaa
tgtaactgtgaccagaataatggacaatgccagtgcctgcccaatgtagttggacagcat
tgtgatttgtgtgccccagacacttggaacatggccagcggtcgaggttgtgaggcctgt
gactgtgacccaaatcactcatccagcactgcgtgcaatgagataagtggtcagtgtatg
tgtaagcctggatttggaggaagaacatgcagggagtgcagagagctgttttggggtaac
cctgaggtcaaatgccatgcctgtgactgtgaccccagaggaattgctgagcagcagtgt
aacaaagctacgggacattgtgtgtgtgtggagggtgtgtcgggcccccgctgtgacact
tgtgctcggggttactttggtgaattcccacactgtgaacgctgccaccagtgcttcgct
gaatgggatgtgatcgtaggagagctcactaaccagacacacaggctggtgcagaaagtt
aacaccattaaatccaatggcctcactgggccttacaaggacaccattaacaacatggag
cggagtgccaattccatccgcgagcttctggcccagaaccctgctactcagcctctcact
gagatccagagcctgctcgagcaagctacatccttgatgacagaaatgaatgagaagctg
aatcagacagaggagctcttgtctcagatctctgaaaacagtacagattcgaagctagaa
acactcagtgaagaagcgcagaaactgcagcgcaccgtaaaagacctgcaagaccaagtt
gagttcatgaagaattccgatgtgcgaggagcattagacagtgtaaagaaacacatgcag
gagtctgaagcagcagaggctcgagtgaacgcctcgatcagtgatcccgagagcctggtg
gagcagtcagcctcactgcgtaattacacagagtctatgatgaatgaaactaaagaggag
ttccagaggaagcaagatgagcataccaaggtgctggatgatctggctggccagctcgag
accctggacctgtctgaactgagtgagaatacttgtggcagccgtgctggatcggaagcc
tgtgctgactctccctgcggaggcctgggctgtctggatgctgaaggaaacaggaagtgt
gggggagagggatgtaatggtctgaccacattggcccataatgcctggcagaaagccaag
gactttgaccaagatattgtcagtgctatggaggaggtggacaagctttctaagatggtg
tctgaggcgaaagtaaaagcagatgaggccaagttgaacgctcaagaggttctgcagaaa
accaatgcgaccaagcagcgcgtggacaatagtaacgaagagctgcgcagactcatcaaa
cagatccgagacttcctcactcaagaaggagcggacctggagagcatcgaggctgtggct
aacgaggtgcttcagatgcagatgcccaccacgccagctcagctgcagaacctgacagca
gatattcgggagcgtgtgtccagcctgtctgacgtggccgacatccttaaccagagcgct
gctgatattgagagagctgagactctgctggagcaggcccgcaaagccaggaaagaggcg
tctgatgtgaagagcacagctgagctggtacaggaagctctggaccaggcggaaaaagct
cagacggccgtgactgaggccttgaagcaggccactaatgacataaagggaacacaggct
ctgattgtatctgtagagtcagagacggcggattcagagttcaagctgagtaacgctacc
cagaggctactccagctggaaaaggatgttgctcttttgaaagaaaaagccctcaatact
gctaccactgtagaaatgacagagaaagacacagacagtgcgactgagctggcagagcag
atcaaaaaggatctggacacagaactgaaggataagtatggtactgtggagggcctcatc
tctgaaaaggctcagggtgtagcagatgctaagaaaagagctgagatgcttcaagaggaa
gccaaagagctgctgctgcaagctagtaaaaaactacagcttctcaaagatttggaaaaa
tcctacgatgaaaaccagaagacactggaagataaagccaaccagctagtggatctagaa
aaggctgtgaaagagttacttcaagaaattagccagaaagccactgtatacagcacctgt
ctgttttaa
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