Clarias gariepinus (North African catfish): 128506135
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Entry
128506135 CDS
T10780
Symbol
sox1b
Name
(RefSeq) transcription factor Sox-1b
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128506135 (sox1b)
Transcription factors [BR:
cgar03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
128506135 (sox1b)
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GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
128506135
NCBI-ProteinID:
XP_053332415
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All DBs
Position
18:15152108..15153903
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AA seq
344 aa
AA seq
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MYSMMMETDLHSPTPQTNTSAGHTGQNAAGKLSQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLASSAGGGGVTLGMSTAQRLESPVGHGGGAGAASYAHVNGWANGAYTAAAAAA
MMQEAQLAYGQHASAGAHHHGHHPHHHGHHHPHHQHAASAQSVHRYDMSALQYSPMSNSP
SYVSASPSTYAAMPYTQHQSSVSAAAAGGVGTLGSLVKPEPSGSPPLSAASRAPCPGDLR
EMISMYLPAAEAGDASVQSRLHALPQHYQSTAAAINGTVPLTHI
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaacggacttgcattccccgacaccccaaacgaacacgagt
gcggggcacacgggccaaaatgctgcgggaaaactgagccaggagcgcgtcaagcgcccc
atgaacgcatttatggtgtggtcccgcgggcagcggcggaagatggcacaggagaacccc
aaaatgcacaattcggagatcagcaagaggctcggggccgagtggaaagttatgtccgag
gcagagaagcggcctttcatagacgaggcgaaacgcctgcgcgccatgcacatgaaggaa
cacccggattacaagtaccggccgcgtagaaagaccaaaacgctgcttaaaaaggacaaa
tactccctggcaggcggactgcttgcaagttctgccggcggtggcggtgtgactcttggg
atgagcaccgcgcagaggttagagagtcccgtgggtcacggtggcggcgcaggcgcggcg
agttacgcacacgtgaacggctgggcaaacggcgcgtacacagcagccgccgccgcagcc
atgatgcaggaggcgcagttagcctacgggcagcatgcaagcgctggggctcaccatcac
ggtcaccacccgcatcaccatggacaccaccacccgcaccatcagcacgccgccagcgcg
cagtccgtgcaccgctatgacatgagcgcgctgcagtacagccccatgtcgaactctccg
agctacgtgagcgcctcgccgtcgacctacgctgccatgccgtacacgcagcaccaaagc
tccgtctcggcggcggcagcgggcggcgttggcacgctcggatcgctcgtgaagcccgag
ccgagcgggagtcctcccctcagcgccgcgtcccgcgcgccctgtcccggtgacctgcgc
gagatgatcagcatgtacttaccggcagcggaggctggtgacgcgtctgtacagagcaga
ctgcacgcgctgccacagcactaccagagcactgcagctgccattaacggaaccgtcccg
ctgacgcacatttaa
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