Clarias gariepinus (North African catfish): 128506170
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Entry
128506170 CDS
T10780
Symbol
col17a1a
Name
(RefSeq) collagen, type XVII, alpha 1a isoform X1
KO
K07603
collagen type XVII alpha
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128506170 (col17a1a)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128506170
NCBI-ProteinID:
XP_053332457
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All DBs
Position
18:17512848..17538925
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AA seq
1450 aa
AA seq
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MDSLITIKSANAEGVSGVSGKVTESVTTTTRLTSLPPKGSSSSASTQRVLTSTSSSSSGS
GSGSGGTVLVERRIITQSSGGGGGGGGGGGSSNVISSGGSSSSTVQVVTGGVSGGPSVTS
SSSGAAGGSGASRITSSITTVGGGGSANTFESGSSSQFVSSSSADFGSLSGGSLNLSGGG
AYSSIMSSGGGASSTLISVGGSSKYTSSATSTMKSATYSPVTQRKSSLTLRTAGYEGSSS
GNSSPEYTRKEYAAASAATRGRTQTRESEIRARLQSASPSTRWTELDDVKKLLKGSRSSS
SSPPRSPTNTLPIPKKASVDTRIESHSGYDTSILESAYSGYAYHTNPNNLSPTATLQHNM
GLQNNMTLNSSVMSGGLSAGNAVYGMQNNLGSGAGVAVTANGISVAPVYGVQKNIVSTTT
STTAAAVPSSSVATDDVFVKDYKFMLLEKDNAPVKKESERLIMSKDTGKTFTSTMSGTGQ
SATFSDDSLKREKKMISGTTETVTVSNGVRVASTKDKATYAEIRKDDSEGGGMGFCSCCT
WWKWLLGLLLGLLLLLGLLCGLIALAEELKALKIRVEKLEGGGSTKSAYTGPMPASVNIL
NPLESVQYERGGITRSENTIQLGSDPMQSDPVALQRTVRQLVQSELQSDSIRATLAYSLK
GEKGEPGVKGDPGAPGIKGDAGFPGVPGSPGPPGHPGQEGARGPKGSAGEPGHDGPPGQR
GREGPTGPRGEPGPPGVGEKGEKGTSGDPGPPGPAGPSGPMGLRGEVGASGNAGLPGAPG
PQGFRGETGDPGPKGERGPAGPPGAKGDQGEKGPRGVTGEPGQPGPIGPPGEKGPKGSAG
SPGPDGAKGNRGDQGPTGLPGPRGPAGPPGDAGVPGTPGLQGPPGLPGTPGQPGAKGEAG
EPGRVITAGSSSNTVAIPGPPGPAGPAGPAGAPGLSGPIGPAGLPGPPGPKGERGEKGND
GEPGVSAKSVERVRFEPALPGPPGPPGPPGEPGKPGEGKTGQPGPPGPPGAPGVGLPGPP
GDKGEPGSFVPTSETFFAGPPGPPGAPGEPGHPGLPGEPGIGFPGPEGPTGPPGPEGLPG
PQGPPGPEGPPGPKGDAGVPGAPGIPGYSYGAGRSSPGPPGPPGPPGPPGPPGDGSGSPD
ISQQLNNLLRNDGIREYLAGPPGPPGPPGSLSDDNLANRVISYIQREDVRKFLVGPPGPP
GPPGIPGLNPQEVAGRVLNLMNEQGMLTQAGPPGSPGSPGLAYSDLPVLLQNAGFRGPPG
PPGPPGPQGPPGITGSLVSYAENANQEPIRAELQEYVKSGRVFREEPSHHFPKSKHLPVE
TLDYPSIAEQVVNYIKTHGLLLRELKDIQGPPGPPGPPGRPGISHSYNAYGNMTELIKMI
RDNGMVGPPGKPGQKGEIGYPGPRGLKGPRGEQGIPGLPGLPGNDGLRGQKGEKGEAAYL
NHKRKRSTGV
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atggacagtttaatcacaatcaagagtgcaaacgcagagggagtatcaggtgtttcaggg
aaagttacagagagtgtgaccaccacaaccagacttacctcccttcctccaaagggcagc
agtagttcagcgagcacacagcgagtgctcacatcgacctctagctctagttcaggttca
ggttcaggttctggaggaacagtactggtggagaggaggatcatcacccagagcagcgga
ggaggaggaggaggaggaggaggagggggcagtagtaatgtcatatcctcaggtggctcc
agcagcagtacagtgcaggttgtaactggtggcgtaagcggagggccgtctgtgacttca
tcttcaagcggagccgctggaggttcgggagcgtcccgtataacctcctccatcactaca
gtcggaggcggaggttctgcaaacactttcgagtccggctcgtcttctcagtttgtgtcc
agctcttctgcggacttcgggagcctttcaggtggttctctaaatctgtcagggggtggg
gcttactcatctatcatgtcctctggaggaggggcttcttcgactcttatatcagtggga
ggctccagcaaatacacctcctccgccacaagcaccatgaagagtgctacttactcacct
gtcacacagaggaaaagcagcctgaccctgcgcactgcaggatatgaaggaagttccagc
ggcaactcctcccctgaatacactaggaaagagtatgcagcagcaagtgcagccacccga
ggccgtacccagacaagagaaagtgaaatcagagccagactgcagagtgcctctccatcc
actagatggactgagctggatgatgtaaagaaacttctcaaaggaagtcgctccagtagc
agcagcccccctcgctctcccaccaatacactacctatacctaaaaaagcaagtgtggac
acacggatagagagccactcaggttatgacacctctatcctggagtctgcatacagtgga
tatgcctatcacaccaaccccaacaacctcagccccactgccacactacaacacaacatg
gggctgcagaacaacatgactttgaactcttcagttatgagcggtggactttctgctgga
aatgcagtttacgggatgcagaataacctgggcagcggtgccggtgtggcggtcactgcg
aatgggatcagtgttgctccagtctatggagtgcagaagaacattgtgagcactaccacg
tccactactgctgcagccgtccccagcagctctgtcgctactgacgacgtgttcgttaag
gattacaagtttatgctgctggagaaagacaatgctccagtaaagaaggaaagcgaaagg
ctgattatgtcgaaagacacgggcaaaacattcacgtccaccatgtccggtacaggacaa
tcagccacgttttcagatgactcgctgaaaagggagaaaaaaatgatctctgggaccaca
gaaacagtaacagtgtcgaacggtgtcagggttgcttcaacaaaggacaaagccacatat
gcagagattcgtaaagatgactccgagggaggtgggatgggattctgttcctgttgtaca
tggtggaaatggctgcttggattgctgttgggtctgctcttactgctggggctcctctgt
ggactcatcgctctcgctgaggaactaaaggccctaaaaattcgtgtagaaaagctagaa
ggcggaggaagcactaaaagcgcttacacgggtcctatgccagcatctgtgaacatttta
aatccactggaatctgtacaatatgaacgcggtggaataacacgatcagaaaacactata
cagctgggatctgaccccatgcagtccgacccagtcgcactgcagaggaccgtaagacaa
ctcgttcagtctgagttacagtcagacagcattagagctacactggcatactcactaaaa
ggagagaaaggggaacctggggtaaaaggtgacccgggagctcctgggattaaaggtgat
gcaggatttcctggagtgccaggttctcctggtccccctggtcatccaggacaagaaggt
gcaagaggacctaaaggaagtgctggtgagccagggcatgatggcccacctggacagaga
ggacgtgagggaccaacagggcccagaggagagccaggccctcctggagttggtgagaaa
ggagagaaagggacatctggagatcctggaccccctggacctgcaggaccatctggacct
atgggactcagaggtgaagtgggtgcttcaggtaatgcaggtcttccaggggctcctggt
cctcaaggcttccgtggagagactggtgatcctggaccgaaaggggaaagaggacctgca
ggacctcctggagctaaaggtgatcaaggagaaaaagggccccgtggtgttaccggagaa
ccagggcagccaggacccatcggtccaccaggggagaaaggacccaaaggatcagcaggt
tcccctgggccagatggtgcaaaaggaaatcgtggggaccaaggaccaactgggttgcct
ggtccacgtgggccagctggacctccaggagatgccggagtgccaggaactcctgggctt
caaggcccaccaggtttgccaggaacaccaggtcagcctggtgctaaaggtgaagcaggt
gaacctggcagagttatcactgcaggctcttcttccaacactgtggcaattcctgggcca
cctggacctgctggaccagctgggcctgctggagctcctggactgtcgggtcccattggc
cctgccggtcttcctggcccccccggacctaagggagaaaggggtgaaaagggtaatgat
ggagaacctggagtttctgctaaatctgttgaaagagttaggtttgagcctgctcttcct
ggtcctcctgggccccctggaccacctggagaacctggcaaacctggtgagggcaaaacg
ggccaaccaggacccccaggtccccctggagcgccaggtgttggactacctggtccacct
ggtgacaaaggtgaaccaggaagctttgttcctacctcagaaaccttttttgctggacct
cctggacctcctggtgctccaggagagcctggacatcctggactaccaggagaacctgga
attggttttccaggacctgaaggtccaactgggcccccaggtcctgaaggcctaccaggc
ccacagggaccaccaggcccagaaggtccaccagggccgaaaggtgatgctggtgtccca
ggggcccctggcatcccaggatattcttatggtgcaggcagaagttcacctggaccacct
ggtccacccggacctccagggcctcctggacctcctggtgatggctctggctctccagat
atttctcagcagcttaacaatcttcttagaaatgacggcattagggaatacttagctggt
cctcctgggcctcctggaccacctggaagtttatctgatgataatttggctaatcgtgta
atcagttacatccaaagggaggacgtgaggaagtttctggtaggtcccccaggaccaccc
ggtcctccgggtattccaggcctcaacccacaggaagtagctggaagagtcctcaatctc
atgaatgagcagggtatgctaacccaagctggacccccaggatcccctggatccccagga
ttagcctatagtgatctaccagttctcctacaaaacgctggttttagaggtccacctgga
cctccgggacctcctggacctcagggccctcctggaatcacaggaagcctggtgtcatat
gctgagaacgcaaatcaagagccgatccgtgccgaactgcaggaatatgtgaagagtggc
agggtgttccgtgaagaaccaagccatcattttccaaagagcaaacatttgccggttgag
actttggactaccccagtattgcagaacaagtggtgaactacatcaaaactcatggttta
ttgttgcgggaactcaaagatattcaaggaccacctggtccccctggaccacctggacgt
cctggaatcagccattcatacaatgcttatggcaacatgaccgagctaattaaaatgatt
agagacaatggcatggttggaccaccaggaaaacctggacaaaaaggagaaataggatat
cctggtcccaggggactaaaaggtccaaggggtgagcaaggcatccctggtctaccagga
cttcctggcaatgacggactaagaggacaaaaaggagaaaaaggagaagctgcctactta
aaccacaaaagaaagagaagcacaggtgtttag
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