Clarias gariepinus (North African catfish): 128506308
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Entry
128506308 CDS
T10780
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
cgar Clarias gariepinus (North African catfish)
Brite
Ribosome biogenesis [BR:
cgar03009
]
Eukaryotic type
90S particles
Other 90S particles
128506308 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128506308
NCBI-ProteinID:
XP_053332671
LinkDB
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Position
18:17451253..17474284
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AA seq
1827 aa
AA seq
DB search
MASAEEDFPRGGPAKKSSEPKTSKTTKPHVEVDNLFETREPEVKKKKKAQGKHEDEKLTK
RPKTEGGLKLNTTTSINILHMKDLKVGTVMLGCVRELSIFEVVLGLPNGLKGYVPISNLS
DVYTKILSSVLDSGAELEEFVSPSNVLTPGQLVRCVVTSLDLSKAGHVSLKLSINPKDVN
KELNSGSLKAGMTLSGCVESVEDHGYLIDIGVSGTKAFLPKEKTKDEAETSKRDLKVGQY
VTAMLEEVKNEGRVARLSVNPTAVNQTCAETHHGWTLSNLLPGLLVQACVKKVTAHGLMV
SFLSSFTGLVDFMHVDPDKLSTYSVGDEVRARILYVDPSSRLVGLSLRSHLLPPGGVMLD
HITSERIGEVVKGCKMASVHHHSGAVMELPDGASAFVHKSHLDEPKAEFNPNRLLAQPEH
TLRITDYCAVEQIHMATLRKTIIEAPFFSYRDIKPGQTIEGTVQSLERYGMHVKISEHIK
GLVPRIHLADILLTNPEKKYKEDMKVKCKVLSVDYQNKKIILTRKKALMDTTLPAFLSYK
DARVGLVSHGFIVCIRDFGCIVRFYGDVKGLVPTSELTSEPTDNLKGLFYIGQVVKAKVL
MCDAEKDKLLLSFKKVTQSDIEKVPRVKFDFEVGKKVKAIVRKKHQTGLEVSILPEEMPA
LLPTVHLSDHVTNCPLLWAGLQEGDTISDAVCLSRNKESIILSKKPSLIAALETESLVSS
FSELQVGMVMVGWVKSIMPYGVFVDFPYGLFGLAPKAAMSDKFITDTAGVFEIGQTVLAK
VTNLDQEKRRFLISLKVSEVSWAESDAQARLIQGQRERLTVYDTITTRGVSDVLEQLYSV
SLGDKLKMTIDVTREDGSVTLTSDQLRDVTVLATQHHVTDVNTTAGNQVTAVVLHIDVLT
SEVHVSLLPSLTTKKKKLKKDSQHTATVQYMDKDFAVISLGDTGHLTVISTTVHPNETLR
FESEKLSVGRDLTVTVIEPSSEHLGGRALVDHQLAPKKYTHSKSQIRGEEHKYKIGDFIT
ATVKKCKPLCVHLTLPNGVMGSVHVSQVDDSPKVGGFPTASLKVGTEVRGRLIGAQEIHS
HKFLPISHPNFVFSRLEITLLPSKLNKDVTVALLESKPKLECFNPGQEIMCYVSRYIPST
KCLEVAVSPNLFGSVELLAMITKPREAKNPQKLFQPGQCVSAKVVRVVPKKHYQLKLSLT
GTHALEKGVVTMGMVRKIIPEVGLILNLPFGKSGMACVTDLTDAYVDAPFDQYKEDQVVR
CCVIGEEDGKFQVSLRPSSIRSGKSSKVKDVDVGSVSDLQEGQIIRGYVKNVGEKGIFVR
LSRSVTGRVLFQHATNYFAGDSDLFSQHVTQNALLTAKVLHIDAQTGHVDLSLLPEDTGG
ADILPESLGLPLRLRGKEKEKYDKKNATRKRKMSESKQDETGQQKKLKKEEKDAEMKKKK
KKESKSSQAEDQDSGVEVYFREKDKDKAKKRAKRETAASAEPGRLQLASDFSWDVELSSL
KPAVSAQTGYESSDDEQPHHDLNMASKKSRREAERERKEAELKLSKLEAELMEASSRPES
AEAFERLLLSSPDSSLLWLQYMAFQLQATQIEQARTIAERALKTISFREEQEKLNVWVAL
LNLENMYGTEESLQKVFERAVQYCEPMPVYQQLADIYAKSNKIKEAESLYKNMLKRFRQE
KAVWQSYGSFLLRQGQSDAANALLQRALQSLSNKEHVDLIVRFARMEFQYGNEERAKAMF
EKVLSSYPKRTDLWSVFIDLMMKHGSQKDVRALFDRVVHLSVSMKKIKFFFKRYLDYEKK
HGTPESIQAVKQKAVEYVESKGTGAAD
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgctgaagaggatttccctcgtggtggcccagccaagaaatcctctgagccc
aaaacctctaaaactacaaagcctcatgtggaagtggacaacctttttgagactcgagaa
cccgaagtgaaaaagaagaagaaagctcagggtaagcatgaggacgaaaagctgaccaaa
aggccgaaaaccgaaggcggcctgaaacttaacacgacaaccagcatcaatattctccac
atgaaggatctgaaggttggcacggtgatgctcggctgcgtgagggagctctccatcttt
gaggtcgtactcggtctcccgaatggtcttaaaggctacgtgcccatctctaacttaagc
gatgtctacacaaagatcctgagcagcgtgctggactctggggccgagcttgaggagttt
gtgtctccctccaacgtcctcaccccgggccagctggtcaggtgtgtagtgacgtctctg
gacttgtccaaagcgggccacgtcagtctcaaactgtccatcaacccgaaagacgtgaac
aaggagctcaactccggttccctaaaagcaggcatgactctcagtggttgtgtggagagc
gtggaggatcacggttacctgatcgacatcggcgtgagcggaaccaaagcctttctgccc
aaagagaaaacaaaggacgaagccgagacatcgaaaagagatctgaaggtgggacagtac
gtgacggcgatgctggaggaggtgaagaatgagggacgggtagcgcgtctttctgtgaac
cctacggctgttaatcagacctgcgcggagacgcatcatggctggacgttgagtaacctc
ttacccgggctgctggtccaagcctgcgtcaagaaggtgacggctcacggcctgatggta
tcgtttctctcctcttttaccggcctggtggacttcatgcacgtggacccagacaaactg
tccacttacagtgtaggggacgaggtgagagctcgtatcctgtacgtggacccgtcctct
cgtctggtgggtctgtctcttcgcagccacctcctgccaccagggggcgtcatgttggac
cacataacgagtgagcgaattggagaggtggtgaagggctgcaagatggcttctgtacac
caccactccggggccgtgatggagctgccggacggagcgtccgccttcgtgcacaaaagc
catttggatgaacccaaggcggagtttaacccgaaccgactcctcgcgcagcctgaacac
acgctgagaataacggactactgcgcggtggagcagatccacatggccacgctgcgcaag
acgatcatcgaagcgcccttcttcagctatcgagacattaaaccagggcagaccatcgag
ggcacggtgcagagtctggagcgctacggcatgcacgtcaaaatctcagaacacattaaa
ggccttgttcccagaattcacctggcagacatcctcctcaccaaccctgaaaagaagtac
aaggaagacatgaaggtcaaatgtaaagttttatcagtggactaccaaaataagaagatt
attctgaccaggaaaaaggcgctgatggacaccacgcttcccgcgttcctgtcatacaag
gacgcccgtgtgggtctcgtctcccacggcttcatcgtctgcatcagggatttcggctgc
atcgtgagattctacggtgacgtcaagggcctggttccgacgtccgagctgacctccgag
cccacagacaacctgaagggccttttttacattggacaggtggtcaaagccaaagtgctg
atgtgcgatgccgaaaaggacaaactgctcctgtcttttaaaaaagtgactcagagtgac
atcgagaaggtcccaagggtcaagttcgactttgaagttggaaagaaagtgaaagcgatt
gtacgcaagaaacaccagactggcttagaagtgtctattctcccagaagaaatgcctgct
ctacttcccacagtgcacctctctgaccatgtgaccaactgccccctgctgtgggcggga
ctccaggaaggagacaccatctcggacgctgtgtgtctaagcagaaacaaagagagcatc
attctgagtaagaagccctcgctgatcgcggctttggagacggaaagcttggtttcgtct
ttctccgagctgcaggtcgggatggtgatggtgggctgggtgaagagcatcatgccctat
ggcgtcttcgtcgacttcccttacggcctgttcggcctcgcgcccaaagctgcgatgagc
gataagttcatcaccgacaccgcaggagtgtttgagatcgggcagacagtgctggccaag
gtgaccaacttggatcaggagaagcgcaggttcttgatcagcctaaaggtatcagaggtg
agctgggcagagagtgacgcccaggccagactgatccagggtcagcgagaaagactaacc
gtctacgacacaatcaccacgagaggtgtctcggacgtgctggagcagctctactccgtg
tcactcggggataaactgaagatgaccatcgacgtgaccagagaggacggttcggtcacg
ttgacctcagatcagctcagagacgtcacggtgctggccacccagcaccacgtgacagat
gtgaacacaactgcaggaaatcaggtcactgctgtggtgcttcacattgacgttttgacc
tctgaggtgcacgtgtccctcctgccgagtctcacgaccaagaagaaaaagttaaagaaa
gactcccagcacacagcaacagtccagtacatggacaaagactttgccgtcatctcattg
ggcgacaccggtcacctgaccgtgatttccaccaccgtccacccgaacgaaacgctccgg
ttcgaatcggagaagctgtccgtgggtcgtgatctgaccgtgaccgtgattgagccgagc
agcgaacacctggggggacgagctctcgtagatcatcagctcgcgccgaaaaaatacaca
cacagcaagtctcagatcagaggggaagaacacaagtataagattggggactttataaca
gccacggttaaaaagtgcaaacctctgtgtgtacacctgacgttgccgaatggtgtcatg
ggaagcgtgcacgtgtctcaggtggacgattcgcccaaagtgggaggattccccacagcg
tccctgaaggtcggcactgaggttagaggaaggctcatcggggctcaggaaatccacagc
cacaagtttctccccatctcgcatcctaactttgtcttctctcggctggagatcacgctc
ctccccagcaaactgaataaagacgtgactgtcgccttactggagagcaagccgaaactg
gagtgctttaaccccggacaggagatcatgtgctatgtgtctcgatacattccatcgaca
aagtgcctggaggttgcggtgtctccaaacctctttggatctgtggagctgctggcgatg
atcactaaacccagagaggcaaagaatcctcaaaagctcttccagcccggccagtgtgtc
tctgctaaggtcgtccgggtcgtccccaagaagcattaccaactgaaactttcccttaca
gggacgcacgctctggagaagggggtcgttaccatgggcatggtgaggaaaatcatccct
gaggtcggcttgattctgaacctgccgttcgggaaatccggcatggcgtgcgtaactgat
ttaacggacgcctacgtggacgcaccgttcgaccagtacaaagaagaccaagtggtcagg
tgctgtgttattggtgaagaagacggaaagttccaagtatctctgcgcccctccagtatc
cgatctggaaagtcgtcgaaagtcaaagacgtggacgtgggctccgtctcggacctccag
gagggtcagatcatccggggttacgtgaagaacgtcggcgagaagggcatatttgtgagg
ttatccagatcagtcacgggacgggtcctgttccaacacgccacaaactacttcgcaggc
gactcggacttgttcagccaacacgtcacccagaatgcactgctgacagccaaagttctc
cacattgacgcacagacgggccacgtggacctgtccttgctcccggaggacaccggagga
gcagacattctcccagaatccctcgggcttccgctgcgcctcagggggaaggaaaaggag
aagtacgacaagaagaatgccacaagaaagcgcaagatgtccgagagcaaacaggatgaa
accggacaacagaagaaactcaagaaagaagaaaaggatgcagagatgaagaagaagaaa
aagaaggagtcgaagagctcgcaagctgaagatcaggacagcggagtcgaggtgtatttc
cgagaaaaagacaaggataaggcgaagaaaagggctaaaagagagactgcagcctcagcc
gagcccggcaggctacagctagcgtctgatttctcctgggacgtagagctgagctcactc
aaacctgcggtttctgcccaaactggctacgagtccagcgatgacgagcaaccacaccat
gatcttaatatggcatcaaagaagtcccgacgggaggcggagagagaacgtaaggaggcg
gagctcaagctcagcaagctggaggcggagctcatggaggcgtcgtcccgtccggagagc
gccgaggcgttcgagcgtctgctgctctcgtctccagactcgtctctgctctggctgcag
tacatggccttccagctgcaggccacacagatcgagcaggctcgcaccatagccgagaga
gcgctcaaaaccatctcctttagggaggagcaggagaagctgaacgtctgggtggctctg
ctcaacctggagaacatgtacggtaccgaagagagccttcagaaagtgttcgagcgagcc
gttcagtactgcgagcccatgcctgtctaccagcagctggcggatatttacgccaagtcc
aacaagatcaaagaagcagagagcttgtataagaacatgttaaagcgcttcaggcaggag
aaggccgtgtggcaaagttacgggtccttcttactgcgtcagggacagagcgacgctgcc
aacgctctcctccagagggcgctccagagtctgtccaacaaagagcatgtggacttgata
gtcagattcgctcggatggagttccagtacgggaacgaagagcgagccaaggccatgttc
gaaaaggtcctgagcagctacccaaagcgcactgacctgtggtccgtctttatcgacctg
atgatgaagcacggctcgcaaaaagatgtcagggctctcttcgatcgcgtggtccacctg
agcgtctcgatgaaaaagatcaagttcttcttcaagcgctacctggactacgagaagaag
cacggcacgccagagagcatccaagcagtcaagcaaaaagctgtggagtatgtggagtct
aaagggaccggcgctgctgattaa
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