Clarias gariepinus (North African catfish): 128506548
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Entry
128506548 CDS
T10780
Symbol
gpc6a
Name
(RefSeq) glypican-6a isoform X1
KO
K08112
glypican 6
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cgar00535
]
128506548 (gpc6a)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cgar00537
]
128506548 (gpc6a)
Proteoglycans [BR:
cgar00535
]
Cell surface proteoglycans
Glypican family (GPI-anchored HSPG)
128506548 (gpc6a)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cgar00537
]
Others
128506548 (gpc6a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glypican
Fz
Motif
Other DBs
NCBI-GeneID:
128506548
NCBI-ProteinID:
XP_053333021
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Position
18:complement(24324222..24477003)
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AA seq
624 aa
AA seq
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MSMVRLQVCVLALSAALCVCSGGRGAERMEHEEDGGGGGGGEDDDGVSRSCRDVKQALMG
KGFTSVRINQHQTAGEHLRVCSQGYTCCSAEMEDAITHRSKVDLERLMEDSSSALRTVFT
TKHKKFDEFFLKLLENSEKSLNHMFIRTYGNLFMQNSEIFEDLFSELRRYYTGGNVNLEE
MLGDFWARLLEKMFQLLNSQFTFTDEYLECVSKYTDQLKPFGDNPRKLKVQITRALAAAR
TFVQGLMVGREVANRVAKVNVSPGCSKALTRMLYCPYCGGFVDLKPCSSYCQNVMKGCLA
NHADLDPEWNVFIDSMLLVADRLKGPFNIEAVIEPIDLKISEAIMTMQENSIQVSEKVFQ
GCGHLKPVRSGSGRSTREVFNARFKPYNPEEIPPSESSGLDKLRSVWRTMQDSVIDIKEK
LKQAKRFWTSLPDVICSKENLIEPNSDQCWNSHTKGRYFPEVVKDGLTNQLSNPEVEIDI
TRPDTFIRQQIMALRVMTNKLRSAYNGNDFSFVDSSDEVSGSGSGSGYTTEFEFTSTEAP
AVGAGRQDQATPLRPASDKATPLRPPSDKAPPLIASPIALMTLTLLYFWWRYGLEGAWTA
ERQLSSSHKVSPTLMGLHDGKHED
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgagcatggtgaggctgcaggtgtgtgtgctggctctgtccgcggcgctctgcgtctgc
tcgggaggacgaggagccgagcgcatggagcacgaggaggatggaggtggaggtggtggt
ggtgaggatgatgatggagtctctcggagctgcagggatgtcaagcaggctctcatgggg
aagggattcaccagcgtcaggattaaccagcaccagaccgcaggtgagcacctgcgcgtg
tgttctcaggggtacacgtgttgcagtgcggagatggaggacgcgatcacacatcgcagt
aaagtcgatctcgaacgcctgatggaggacagcagcagcgccctgagaaccgtcttcacc
accaaacacaagaagtttgacgagttcttcctcaaactgctggaaaactcagagaaatct
ctgaaccacatgttcatccgtacctacggaaacctgttcatgcaaaactctgagatcttt
gaggacctgttctcagagctacggcgctactacacaggaggaaacgtaaacctggaggag
atgctgggcgacttctgggccaggctactggagaagatgttccaactactgaactctcag
ttcacgttcacagacgagtatctagaatgtgtgagcaagtacacggaccaattgaagcca
tttggagacaacccgcgcaaactcaaggtccagatcacacgcgccctcgctgccgcacgg
accttcgtccagggactcatggtgggacgggaggtggccaatcgtgtggccaaggtgaac
gtctctccgggctgcagtaaggctctgacgcggatgctctattgtccctactgcggtggg
tttgtggacctgaagccgtgcagtagttattgtcagaacgttatgaagggctgcctcgct
aatcacgctgacctggacccagagtggaacgtcttcatcgattccatgctcctggtagct
gacagattgaaggggccgtttaacatcgaggccgtgatagagccgatcgacttgaagatc
tctgaggccatcatgaccatgcaggaaaacagcatccaagtctctgagaaggtgtttcag
ggttgtggtcatctcaaaccagttcgatccggatcaggtcggagcacccgtgaggtgttt
aatgctcggtttaaaccttacaacccagaagaaattcctccgtcagagagcagcggcctt
gacaaactgaggagcgtctggagaacaatgcaggacagcgtcattgacatcaaggagaaa
ttgaagcaggcgaagaggttctggacatcactgcctgatgtgatctgttcgaaagagaac
ctgatagaaccaaacagcgaccagtgctggaacagtcacaccaaaggaaggtatttccca
gaggttgtgaaggatggcttgaccaatcagctgagtaatccagaggtggagattgacatc
actcgcccagacaccttcatccggcagcagatcatggcgctgagagtgatgaccaacaaa
ctccgcagcgcctacaacggaaacgacttctccttcgtggactccagtgatgaggtgagt
ggttcgggcagcggaagcggctacaccacagagttcgagttcacgtccacggaagcgcca
gcggtgggggcggggcgccaagaccaggccacgcctctgcgacctgcatccgataaagcc
acacctctcagacctccttctgacaaggcaccgccccttatcgcctcacctatcgcttta
atgacgctcacgctgctttacttctggtggagatatgggctggaaggggcatggacagct
gagaggcagcttagctcctcccacaaggttagccccaccctcatggggcttcacgatgga
aagcatgaggattga
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