Clarias gariepinus (North African catfish): 128506652
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Entry
128506652 CDS
T10780
Symbol
spast
Name
(RefSeq) spastin isoform X1
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgar04131
]
128506652 (spast)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cgar04812
]
128506652 (spast)
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
128506652 (spast)
Membrane trafficking [BR:
cgar04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
128506652 (spast)
Cytoskeleton proteins [BR:
cgar04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
128506652 (spast)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
Vps4_C
RuvB_N
AAA_22
AAA_5
TIP49
AAA_14
Mg_chelatase
IstB_IS21
DUF815
AAA_16
MIT
AAA_2
nSTAND3
AAA_24
NPHP3_N
DUF5906
Motif
Other DBs
NCBI-GeneID:
128506652
NCBI-ProteinID:
XP_053333178
LinkDB
All DBs
Position
18:9292897..9303241
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AA seq
582 aa
AA seq
DB search
MNSAFGSSVTLKKRTAARLGPDPWDTCEQEALHHPHPHARSHPRLALLSPLLALCSALGV
VISHLCALVAWLVKPFSRTMAAKAQDPDCDATGDLIKKHHKQAFEFISEALRIDEDEQGP
KHQAVQWYRKGIAELERGIRIEVTGTGEKEERARRLQDKMKKNLIMAKDRLQLLVGVGEA
GLSSDPSRAVHTGAVTPPHSNGSLRPGSSAVPKKTDSSSSTSKVKPARPPSATQRSFSFT
APPAGQTASQSNHKTPAGRSTPRVNTKAAPSSTPQRKKDMKNFKNVDSKLANLILNEIVD
SGSTVRFDDVAGQDLAKQALQEIVILPALRPELFTGLRAPARGLLLFGPPGNGKTMLAKA
VAMESNATFFNISAASLTSKYVGENEKLVRALFAVARELQPSIIFIDEIDSLLCERREGE
HDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDEAVLRRFAKRIYVTLPSEETR
LKLLKNLLSKHGNPLTAKELNQLARVTDGYSGSDLTSLAKDAALGPIRELRPEQVKNMAV
NEMRNIRYSDFVESLKKIKKTVSSQTLEQYVRWNQEYGDTTV
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgcgtttggaagcagtgtgacgttgaagaagagaaccgcagcccggctcggg
cccgacccctgggacacctgtgaacaggaggcgcttcatcatcctcaccctcacgcgcgt
tcccacccgcgtctcgcgctgctctctccactgctggctctctgttcagcactcggggtt
gtgatctcacacctttgtgcactggtagcctggctggtcaagccgttctcccgcaccatg
gctgctaaagcccaggatccggactgcgatgccacgggggacctgatcaagaagcaccac
aagcaggcgtttgagttcatctccgaggctctgcgcatcgacgaggacgaacaaggaccc
aagcaccaggcggtgcagtggtaccgtaagggcatcgcggagctggagagaggcatccgc
atcgaggtcacaggcaccggcgagaaagaagagcgagccagacgactccaggataaaatg
aagaagaacctgattatggccaaagaccgtctgcagctattagtgggtgtcggagaagcc
gggctgagctcagacccctcgcgagctgtacacactggcgccgttactccgcctcactcc
aacggcagtctccgcccaggcagcagtgctgtacctaagaagacagactcctcttcatct
acgtcgaaggtgaagcctgcccggcctcccagtgccacacagcgctcattcagcttcaca
gccccacctgcaggtcaaacagcatcgcaatccaaccacaagactccagcaggtcgcagt
actcccagagtgaacactaaagctgctccttcctccactccacagagaaaaaaagacatg
aagaactttaaaaacgtagacagcaaactggccaacctcatccttaatgagatcgtggac
agtggctcgacagtgaggtttgatgatgtagcaggtcaggacttggccaaacaggcgttg
caggagattgtgatcctgccagcactgcggcctgagttgtttacagggctgagagctcca
gcgagaggactgctgctgttcgggcctccagggaacgggaagaccatgctggctaaagcc
gttgccatggaatccaacgccaccttcttcaacatcagtgctgccagtctgacctccaaa
tacgttggtgaaaatgagaaactggtacgtgctctgtttgctgttgctcgagaactgcag
ccgtcaatcatctttattgatgaaatagacagtctcctgtgtgaaaggagagaaggagag
cacgatgccagtagaagactgaagactgagttcctcattgaatttgatggggtacagtca
ggaggagatgaccgggtgctggtgatgggagccacaaaccgtcctcaggaattggacgag
gctgtgctcaggcgctttgcgaagaggatttacgtgaccttgccctcagaggagactcgg
ctgaagctgctgaagaaccttctgagtaaacatggcaacccactgacagcaaaagagctg
aaccagctagccagggtgaccgatggttactcaggcagtgatctgacctccttggctaaa
gatgcagcactcggacccatacgagagcttcgtccagaacaagtgaagaacatggcagtg
aacgagatgaggaacatccgttactcagatttcgttgagtctttgaagaagatcaagaag
acggtcagttctcaaactctagagcagtacgtacgctggaaccaggagtatggagacacc
actgtatga
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