KEGG   Clarias gariepinus (North African catfish): 128506764
Entry
128506764         CDS       T10780                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
cgar  Clarias gariepinus (North African catfish)
Pathway
cgar03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    128506764 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cgar03021]
    128506764 (taf5l)
   03036 Chromosome and associated proteins [BR:cgar03036]
    128506764 (taf5l)
Transcription machinery [BR:cgar03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     128506764 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     128506764 (taf5l)
Chromosome and associated proteins [BR:cgar03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     128506764 (taf5l)
    STAGA complex
     128506764 (taf5l)
    TFTC complex
     128506764 (taf5l)
    SAGA complex
     128506764 (taf5l)
    SLIK complex
     128506764 (taf5l)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_CDC20-Fz WD40_Gbeta Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd EIF3I TFIID_NTD2 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st WDR55 Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_Aladin Beta-prop_IFT122_1st WDR90_beta-prop_4th NBCH_WD40 ANAPC4_WD40 Beta-prop_WDR41 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_VPS8 Beta-prop_DCAF4 Beta-prop_EIPR1 Tricorn_2nd Beta-prop_SPT8 RMC1_N Beta-prop_HPS5 Cytochrom_D1 Tricorn_N TRIP13_N
Other DBs
NCBI-GeneID: 128506764
NCBI-ProteinID: XP_053333313
LinkDB
Position
18:complement(9760374..9767330)
AA seq 605 aa
MKRGRTEQIQHAVSQYLKRRQYADVDGSLKGVKLSQSAEEMAANLMVQTESSCGNVVSAA
PCQLDPQQYETQFSRLRSFLLDAEVPLAREVSAVLFPLFLYLHLDMARCGLKGAVDYFFS
RFHSFFQQDAEQRAVIEHLRGVVSPQDVASNSKLCSLLEHKYVVHLTDEAYMYLLRYLQS
EDNSALCRVLSTHLQVEVSAARRSDYQLYGGASLATGNSTSTSCSSSWLGMDGTDRAESV
DVAAGLPPQNEAALEALQDCIRRVREGPPSLTTVGFYAFENTEQLLNAAEVSPDSRLLAA
AFDNSALKLWSLRARKLKAGPCRANVSRIRLACDLVEEETEEEELGSEMKTLRGHSGPVY
GAAFLHDSSGLLSCSEDCTVRYWELRGFSNAAVYRGHAYPVWDIAVSPCGLYFCTASRDT
TARLWTPARAHPLRLYAGHLADVDCVRFHPNSSYVATGSTDRTVRLWSTQHGGSVRLLTG
HRGPVLALAFSPDGRYLVSAGEDQRLRLWDLAAGGVLKELRGHTGAVTSLAFSPDSSLIA
SAALDNSVRVWDVRNAHGSGAAPADGSSSELVGVYTGETSSVLNVQFTACNLLLVTGTAQ
EKQEQ
NT seq 1818 nt   +upstreamnt  +downstreamnt
atgaagcgaggccggacggagcagatccagcacgcagtgtcccagtacctcaagagacgg
cagtatgcggacgtggacggttcactgaagggggtcaagctgtctcaatctgccgaggag
atggcagccaacctcatggttcagacagagtccagctgtgggaacgtggtttctgctgct
ccgtgccagttggaccctcagcagtacgagactcagttctccaggttacggagcttcctg
ctggatgcggaggtgccgttggcgcgtgaggtgagcgccgtactcttccctctgttcctc
tacctgcacctggacatggcacgctgcggcctgaagggcgccgtcgactacttcttcagc
cgcttccactccttcttccagcaggacgccgagcagagggccgtcatcgagcatctccgg
ggagttgtctcgcctcaggacgtggcctccaactccaaactgtgctctctgttggagcac
aagtacgtggttcacctgacagacgaggcatacatgtacctgctgcggtacctccagagt
gaagacaacagcgccctctgcagggtgctcagcacacacctacaggtggaggtttctgct
gcgcgtcgctcggactaccagctctacgggggggcgagtctcgctacaggaaactccacc
tccacgtcctgttccagcagctggttgggcatggacggcacggacagggcagagtccgtg
gacgttgctgcagggttaccgcctcaaaacgaggctgccctggaggcgcttcaggactgt
atccggcgtgtgcgtgagggtcctccgtccctcaccacggtcggcttttacgccttcgag
aacacggagcagctgctgaacgccgccgaggtgtcgcctgacagccgcctgctcgccgcc
gccttcgacaactccgcgctcaagctgtggagcctccgagccaggaagctgaaggcgggg
ccctgtagagccaacgtgtccaggatacgcctcgcctgtgacctggtggaggaggagacg
gaggaggaggagctgggcagcgagatgaagacgctgcgcggtcacagtggcccggtgtat
ggcgcggcgttcttacacgactcctccggtctgctgtcgtgctcggaggattgcaccgtg
cgctattgggagctgcgcggtttcagcaacgctgccgtgtaccgaggccacgcctaccct
gtatgggacatcgcggtgagcccgtgcggtctctacttctgtacagcgtcacgtgacacc
acggcacgtctctggactccggcgcgcgctcacccgctccgactctacgccggacacctc
gccgacgtcgactgcgtgcgcttccacccgaactcgagctacgtcgccacgggctcgacc
gacaggacggtccggctgtggagcacgcaacacggcggctcggtgcgtctactaacagga
caccggggacccgtactggccctcgctttctcacccgatggcaggtacctggtgtctgca
ggcgaggaccagcggttgcggttgtgggacttggcggcagggggcgtcctgaaggagctg
cgtggacacacgggtgccgtcaccagcctcgcgttcagcccggacagctctctcatcgcc
tcggccgccctggataactcggtacgcgtctgggacgtgaggaacgcccacggaagcggg
gctgcgccagcggacggctccagctcggaactcgtcggagtttacacgggcgagacgagc
agcgtcctaaatgtccagttcaccgcctgcaacctgctgctggtcaccggcacggcgcag
gagaaacaggagcagtga

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