KEGG   Clarias gariepinus (North African catfish): 128506895
Entry
128506895         CDS       T10780                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
cgar  Clarias gariepinus (North African catfish)
Pathway
cgar03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    128506895 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cgar03021]
    128506895 (taf5)
   03036 Chromosome and associated proteins [BR:cgar03036]
    128506895 (taf5)
Transcription machinery [BR:cgar03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     128506895 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     128506895 (taf5)
Chromosome and associated proteins [BR:cgar03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     128506895 (taf5)
    STAGA complex
     128506895 (taf5)
    TFTC complex
     128506895 (taf5)
    SAGA complex
     128506895 (taf5)
    SLIK complex
     128506895 (taf5)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_CDC20-Fz TFIID_NTD2 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_EML WDR55 NBCH_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_IFT122_1st Beta-prop_VPS8 ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_DCAF12 WD40_RFWD3 Beta-prop_HPS5 Tricorn_2nd WD_LRWD1 Beta-prop_Nup120_160 eIF2A Beta-prop_WDR19_1st LisH_PAC1 VPS8_N Beta-prop_ACSF4 LisH_TPL
Other DBs
NCBI-GeneID: 128506895
NCBI-ProteinID: XP_053333483
LinkDB
Position
18:17437847..17449429
AA seq 785 aa
MKAGNKNARHDDGRAQPIRSHASDVAPASFRSPASSRRCCVACRGKMAAVHDGPSDMENE
KETKPDILSDESAANLPGMMSGTLPTSSPLAPPAAAAPKAEEQQQTLLAVLQFLKRNNLT
ESVEILRREAGLQDELEEARGTEATAPGLNAGTGDTSSLLSRVTSHQSAAPAKATGGEDQ
PDVSVVLSAYSQQGDPSLYQVYYSGLKKFIESVLDCHRAELSQLFYPLFVHMYLELVYNN
HESEAKAFFDKFSGDQECYYLDDLRVLSGLTKKEHMKGNETLLDFRTSRFVLRISRDSYQ
LLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSTSGSLAGEARREANKAKVFYG
LLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSMGSKSKKQDPNAPQQNRIPLPELKDS
DKLDKIMYMKEATKKLRLGLESLPSICFYTFLNAYQGLTAVDITDDSSLIAGGYADSTVR
VWSVTPKKLRKVKSAADLSLIDKESDDVLERIMDEKTASESKILYGHSGPVYAVSFSPDR
NYLLSSSEDGTIRLWSLQTFTCLVAYKGHNYPVWDTQFSPHGYYFVSGGHDRVARLWATD
HHQPLRIFAGHLSDVTCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRILTGHKGPVHSL
AFSPSGKFLVSGSTDARVLLWDIGHGLMIGELKGHSDTVYALKFSRDGEILASGSMDNTV
RLWDITKAVDDVETDDFTATTGHIHLPDNSQEVILGTYLTKSTPVIHVHFTRRNLLLAAG
AYNSQ
NT seq 2358 nt   +upstreamnt  +downstreamnt
atgaaagccggaaataaaaacgctcgccatgacgacggcagagctcagccaattagatcg
cacgcatccgacgtcgcgccagcctcctttcgttcgcctgcgtcatcacgtcgatgttgt
gttgcctgtcggggcaaaatggcggccgtgcatgacggaccgagcgacatggagaacgag
aaagaaaccaaacccgacattctgagcgacgagtcggcggcgaacctgcccggaatgatg
agcggaacgctccccacgtcgtcgccgctggcaccgccggccgccgcggcgccgaaagca
gaagagcagcagcagactttactcgccgtgctgcagttcttgaaacggaacaacctaacg
gagtcggtggagatcctgcggcgcgaggcaggactgcaggacgagctcgaggaggcgcgc
gggacggaggctacagcaccggggctgaacgccggcaccggagacaccagctcactgctc
agccgggtgacctcccaccaaagcgccgctccggctaaagctacaggtggggaggaccag
ccggatgtcagcgttgtcctgtcggcctacagccagcagggagatccctcgttgtatcag
gtgtactacagcgggctgaagaagtttatcgagtcagtgctggactgtcacagggccgag
ctgtcgcagctcttttacccgcttttcgtgcacatgtatctggagctggtttacaacaac
catgaaagcgaagcgaaggcttttttcgacaagttcagcggtgaccaggaatgctactac
ctggacgatctgcgcgtgctctcgggcctaaccaagaaggagcacatgaagggcaacgag
acactgctggatttccgcaccagccgctttgtgctgcgcatttcacgcgactcctaccag
ctgctaaagcggcacctgcaggagcggcagaacaaccagatctggaatatcatccaggag
cacctctacatcgacatctttgatggcatgccgcgcagcaagagtcagatcgacagcacg
tccgggagtctggctggagaggcacgccgagaggccaacaaagccaaggtgttttacgga
ctgttgaaggagcccgagatcgaggtccctctcgacgatgaagatgaggaggctgagaac
gaagagggcaaacccaagaagaagaaacccaagaaggacagcatgggttcaaagagcaag
aagcaggacccgaacgcaccgcagcaaaacaggattcctctaccagaactaaaggactct
gataaactggataagatcatgtacatgaaagaagccacgaagaaacttcgtctaggcctg
gaaagtctgccgtccatttgcttctacacgttcctcaacgcttaccagggtctgacagcc
gtagacattacagatgactccagtctgatagcaggaggctatgccgactctacggtgcgt
gtctggagcgtcacacccaagaaactccgcaaggtcaaatccgcagcagatcttagcctc
atagataaggaatcggatgacgtgctagaaaggatcatggacgaaaaaacagccagcgag
tccaagatcctgtacggtcacagtgggccggtgtacgccgtcagcttcagtccagacagg
aattatctgttgtcgagttcagaagatggcaccattaggttgtggagcttgcagacattt
acctgcctggtagcttataagggacacaattacccggtgtgggacactcagttctcccca
catggatactattttgtgtctggaggacacgacagggtggcgcggttgtgggccactgac
catcaccagcctttgcgtatattcgccggacatctctctgacgtcacctgtacgcgcttc
cacccgaactcaaactatgtggccacgggctcagctgatcgcaccgtgcgcctctgggac
gtcctgaacggcaactgcgtccgcattcttaccggacacaagggaccggtccactcactg
gcgttctcacccagcggtaagttcctggtgtctggctcaaccgatgccagagttctgctg
tgggacatcggccacggactcatgatcggcgagttgaagggtcacagcgacaccgtctac
gctcttaagttcagcagggacggagagatcctcgcctcaggctcgatggacaacacggtc
cggctgtgggacatcaccaaggcagtcgatgatgtggaaaccgacgatttcacagccacc
acaggtcacattcacttacccgacaactctcaggaggtaatactagggacgtacctgacc
aaatccacacccgtcatccacgtccacttcaccagacgcaacctgctgctggctgccggc
gcatacaactcccagtga

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