Clarias gariepinus (North African catfish): 128507183
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Entry
128507183 CDS
T10780
Symbol
rnf180b
Name
(RefSeq) E3 ubiquitin-protein ligase RNF180 isoform X1
KO
K15708
E3 ubiquitin-protein ligase RNF180 [EC:
2.3.2.27
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgar04121
]
128507183 (rnf180b)
Enzymes [BR:
cgar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128507183 (rnf180b)
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128507183 (rnf180b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNF180_C
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-RING_5
Csc2
C1_2
NuBaID_C
Motif
Other DBs
NCBI-GeneID:
128507183
NCBI-ProteinID:
XP_053333861
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All DBs
Position
19:complement(15444314..15456523)
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AA seq
471 aa
AA seq
DB search
MACFEEDDVSYRAGIQEELSILRCKKCRRFIVDSSCLLSTSEDLMTGCTVWHMDIDALPD
WILSIINQVHWTTGKLNCQHCAARLGGFNFLTCSRCPCGLDTTIHLNKSRVDQVVKHLAY
VSRPGTGKGHTGFQVKHRTLEEPDHRNLQSTCDLHQVTHGLNPKPELQSGQMQETHSECE
HCGISQCSCPPYLPLICPVQEEVNEAVAHGIDGHIQPASTELPDHLQDQDSQLDSLPSST
QDTVMEQEDVSDGVVLETQYHASSFPARMLTKREKNRLKSLKRKQRKKERWVQRQLEEKS
MIRNLTSSDEEDKEGCMCAVCLDVYYKPYMCQPCSHVFCEPCLRTLAKSRASSTPCPLCR
TLISHVIFQEELHQRTRIHFPKEYRIRNESFHKTNYSKWPLPSCPKHFRFLWGHRASAGQ
WQFPLGALGLNRLELGVLRGWTFHSDMITFSFHWLLSSFIIMCGLFYILLW
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggcttgctttgaggaggatgacgtatcataccgtgctggaatccaagaggaactctca
atccttcgctgtaaaaagtgccgaagatttatcgtggactcatcatgcctgctttctacc
tcagaagacctcatgactgggtgcacagtgtggcatatggatattgatgcattgcctgat
tggatcctgtcaattattaatcaggttcactggacaacaggaaaactcaactgccagcac
tgtgcagcccgtcttggaggtttcaactttctaacatgttcacgatgcccctgtggactt
gacactaccatacacctcaataaaagccgcgtcgatcaggttgtaaagcatctggcctat
gtaagcagaccaggtacaggtaaagggcacacaggttttcaggttaaacacagaactcta
gaagaaccagaccaccgaaacctgcagtcaacctgtgatctacatcaggtcactcacgga
ctaaatcccaagcccgaactccagagtggacaaatgcaagaaacgcattctgaatgtgag
cattgtggcatctcgcagtgcagttgtcccccttatttgccactcatttgtcctgtacag
gaggaagtaaatgaggcagtggctcatggcattgacggccacatacagccggcatcaaca
gagctaccagatcatctgcaggatcaggacagccaacttgattctcttccatcatctact
caggacacagtcatggagcaagaggacgtcagtgatggtgttgtattggaaacgcagtat
catgcttcctccttccctgcacgaatgttgaccaagcgggagaagaatcgcttaaagagc
ctaaagagaaagcagagaaagaaagaacgctgggttcagagacagcttgaggagaagagt
atgatcaggaatctgacaagcagcgatgaagaggataaggagggctgcatgtgcgctgtg
tgtctagatgtgtactacaaaccatacatgtgtcagccttgcagccatgtgttttgcgag
ccctgtctgaggacgttggcgaagagccgggccagcagcacaccatgtcccctctgcaga
actctcatatcacatgtgatcttccaggaagaacttcatcaacgcacaaggatccacttc
cccaaagaataccgcataagaaatgagtcattccataagaccaactattctaaatggccc
ctgcccagctgtccgaagcattttcgttttttatggggtcacagagcctcagctggtcag
tggcaattccctcttggagcattgggattgaacaggctggaactgggagtcctaaggggc
tggacttttcactctgatatgatcaccttctctttccactggctgctttcctcttttatc
atcatgtgtgggctcttctacatcctcctctggtga
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