Clarias gariepinus (North African catfish): 128507349
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Entry
128507349 CDS
T10780
Symbol
lrfn4a
Name
(RefSeq) leucine-rich repeat and fibronectin type-III domain-containing protein 4
KO
K16355
leucine-rich repeat and fibronectin type-III domain-containing protein 2
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cgar04515
]
128507349 (lrfn4a)
04990 Domain-containing proteins not elsewhere classified [BR:
cgar04990
]
128507349 (lrfn4a)
Cell adhesion molecules [BR:
cgar04515
]
Immunoglobulin superfamily
SALM family
128507349 (lrfn4a)
Domain-containing proteins not elsewhere classified [BR:
cgar04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
128507349 (lrfn4a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
I-set
LRR_4
Ig_3
ig
fn3
Ig_2
LRR_9
LRRCT
Sp38
Motif
Other DBs
NCBI-GeneID:
128507349
NCBI-ProteinID:
XP_053334128
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Position
19:complement(6097361..6106849)
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AA seq
884 aa
AA seq
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MPSQGLLCISRNKDLPWEQLHEKKHIGFKKADSCPISTWSVLWLVLVNYILLGCCPGVFA
GETWGMVSICPFHCVCRNLSESLSTLCVNKGLLFVPPNIDRRTVELRLADNYILEVGGPD
FANMTGLVDLTLSRNTIHILRPLAFGDLESLRSLHLDTNRLTVVGPQDLTGLLNLQHLFI
NNNQLTDVSADAFDDFLLTLEDLDLSYNNLRRVPWEAIQNMASLNTLNLDHNLIDQIAEG
SFSELYKLSRLDMTSNRLQTLPPDPLFSRSQIGIVSPTPYNAIISLNFGGNPLHCNCELL
WLRRLIREDDMETCATPAHLAGRYFWSIPEEEFICEPPLITRNTNKLWVLEGQRAMLKCR
AIGDPEPVIHWVSPDDRIVANSSRIHSYYNGTLDFLVTRARDDGAYTCIAINAAGESTAQ
VELKIIPLPHRGNGTVPLINPRDPGASDMSRDRGGAVGGMVTVRNVTGSEGEDGTSSSST
RTERLVGVQEVTSNSAQVHWFMGRTSTPYLVWMYQIQYNSTADDALVYRILPPTSNSFLL
KNLVSGADYSLCVLAIFDDGISTLATTKVLGCTQFSTKEDYPECRSLHAHFLGGTLTVMV
GGVVVVTLLVFTVAMMMRHRVCGGCQEHFGQLGEFLPAKGVDVYAQTNGNNSMMVALPNR
LLAQQTRAVQAKAKHKEHMLVKLSNEPQCSQDSDMDLVMQKPNASFTTEGEKATFYHSPG
KSAHTLPHPAHKAMTHDCKLKLRRSLERDKDNDTMQGVRQSLTSLALTQSGQVGQGISPN
WPRERCVLGAKRSCSFDAGDITTATCYSYAKRLSVIWTRRSQSLHSMLVHCASTTSTSST
ASEQYSHVLVHGYLHAYASNNSNSNSNSNCSMDANPGDLEESVV
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgccaagtcaaggactgctgtgcatatccagaaataaggatctaccctgggaacagctg
catgagaaaaaacacattggcttcaaaaaagcagattcttgtcccattagcacttggtct
gtcctttggttagtcctagtgaattatatcctgttgggatgttgtcccggtgtgtttgct
ggagagacatggggcatggtttccatctgccccttccactgtgtgtgtcggaacctatca
gagtctctaagcacgctctgtgttaataaaggactgctctttgtccctcccaatattgac
cgccgcactgtggagctccgtcttgcagacaactacatcctggaagtcggtgggcctgac
tttgcaaacatgaccggattagtggacctgacgttatctcgtaacactatccacatcctg
cgcccactggctttcggagatctggaaagcctgcggtcacttcacctggacactaaccgg
ctgactgtggtgggacctcaggatctaacaggccttcttaaccttcagcatcttttcatc
aacaacaaccagctcacagatgtctcagctgatgcgtttgatgacttcctgctcactcta
gaagacctggacctgtcgtacaacaaccttcgcagagttccctgggaagccatccagaac
atggccagcctaaacacccttaacttggaccacaatcttatagaccagattgctgagggc
tctttcagcgagctttataagctttctcgtttggatatgacctcaaacaggctacagaca
cttccccccgatcccctgttctctcggtcacaaattggcatagtcagtccaacaccctac
aacgccatcatcagcctgaattttggtggaaatcctttacattgtaactgcgagttgctg
tggctgcggaggctgatccgtgaggatgacatggagacctgcgccacacctgcacacctc
gctggacgttacttctggtccatcccagaggaagagttcatatgtgagcctccattaatc
acccggaacactaacaagctgtgggtcctagaggggcagagggcgatgcttaagtgccgt
gctatcggtgaccctgagccagtcatccactgggtatccccagacgaccgaatcgtggcc
aactccagccgcatacactcgtattacaacggaaccctggattttctggtaactcgtgcc
agggatgatggagcttacacatgcatcgctattaatgcggctggagagtccactgcacaa
gtggagctgaaaatcatcccactgccccaccgaggaaatggaacagtcccacttattaac
ccccgagaccctggcgcctccgatatgagtcgtgatagaggaggggccgtaggagggatg
gttactgtgaggaacgtgaccggaagtgagggcgaggacggaacaagcagtagcagcact
agaacggagcgattggtaggagttcaggaagtgacctcgaactcggctcaggtgcactgg
tttatgggcagaacctcaacaccttacttggtgtggatgtaccagattcagtacaatagt
acagccgatgatgctcttgtgtacagaattctgccacctaccagtaatagtttcctgctg
aaaaacctagtctccggtgcagactacagcctgtgtgttttggccatctttgacgacggc
atatccaccttggccacgacgaaagtgttaggttgcacccagttcagcactaaagaggat
tatccagaatgccgttctctgcacgctcacttcctcggtggcacgctgaccgtgatggta
ggtggagtggtggtggtaacattgctggtcttcaccgtggctatgatgatgcgacacaga
gtgtgtggaggttgtcaagaacatttcgggcagttgggggaattcctgccagccaaaggg
gtggatgtttatgcccagactaacggaaataacagcatgatggtggctttgccaaacagg
ttgctggcccagcaaacaagggcggtccaggcaaaagccaagcataaggagcacatgctg
gtgaaactgagcaatgagcctcagtgcagtcaggactcagacatggacctagtgatgcag
aaacctaatgcctcttttacaacagagggtgagaaagcgacattctaccactccccaggc
aaaagtgcacacactttgccccacccggctcacaaagctatgacgcatgactgcaagcta
aagctgcggaggtctctagagagagacaaggacaacgacacaatgcaaggtgtaaggcag
tctttaacctcactggccctcactcagtcagggcaggtgggacagggaattagcccaaat
tggcccagggagaggtgcgttttaggggccaagcgtagctgctctttcgacgcaggtgac
atcacgaccgccacctgttacagctacgccaagcgcctgagcgtcatctggacccgccgc
agccagtcgctacacagcatgctggtccactgcgcctccaccaccagcacgtccagcaca
gcgagcgagcagtatagccacgtactggtgcacgggtacctgcacgcttacgcctccaac
aactcaaactccaactcaaattcaaactgtagcatggacgccaatcctggagacctggag
gaaagcgtggtgtag
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