Clarias gariepinus (North African catfish): 128507381
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Entry
128507381 CDS
T10780
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03320
PPAR signaling pathway
cgar04148
Efferocytosis
cgar04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
128507381 (rxraa)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
128507381 (rxraa)
03320 PPAR signaling pathway
128507381 (rxraa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128507381 (rxraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cgar03310
]
128507381 (rxraa)
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
128507381 (rxraa)
Nuclear receptors [BR:
cgar03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
128507381 (rxraa)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
128507381
NCBI-ProteinID:
XP_053334202
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Position
19:complement(25680262..25788870)
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AA seq
503 aa
AA seq
DB search
METKPFLSLGFLKPQCSLAPPPQRGRSGESCSCFSGMCPLHQRRLSTDSGHVTSSPLSSP
TSHRPMHPPLLSPTSIGASGSLHSPISTLSSPMNGLGSPFSVISSPMGPHSMASPGMAYG
PSVSPQMLQLNSPMNSVSSSEDIKPPVGINGMMKVPAQSSGTPLSLTKHICAICGDRSSG
KHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREV
FLHTAVQEERQRAKERNENEVESSSSANEDMPVEKILEAELAVEPKTETYIETNLGVPSN
SPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIA
VKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPD
SKGLSNPSEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFF
KLIGDTPIDTFLMEMLEAPHQMT
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaaccattcttatcattggggttcctgaaaccccagtgctcgctggcgccg
ccccctcagagaggccgctcgggggaatcctgctcctgtttcagcggcatgtgtcctctc
catcagcgcagactctccacagactcaggtcatgtgacctcatctcctctgagctctccc
acgtctcaccgtcccatgcatcctcccctgctgagcccgacttccatcggagcctcggga
tccctgcactcacccatcagcacactcagctcgccaatgaacggcctcggctctcccttc
tccgtcatcagctcgcccatgggcccgcactccatggcgtctcccggcatggcctacggc
cccagtgttagcccacagatgttacagttgaactcgccgatgaactccgtcagcagctcg
gaggacatcaagccgccagtgggcatcaacggcatgatgaaggtgccagcgcagtcctcg
gggacgcctctgtctctcaccaaacacatctgtgctatctgcggagatcgctcctctggt
aaacactacggcgtctacagctgtgaggggtgcaaggggttctttaagagaaccgtacgg
aaggacctgacctacacctgcagagacaacaaggactgcgtgatcgacaagcggcagcgg
aaccgctgtcagtactgccgctatcagaaatgcctggctatgggcatgaagagagaagtt
tttttgcatacagccgttcaggaggagcgccagcgagccaaggaacgtaacgagaacgag
gtagagtcaagcagcagcgccaacgaggacatgccggtggagaagatcctagaggccgaa
ctcgccgtcgaacccaagaccgagacgtacatcgagaccaacctgggcgtgccgtccaat
tcgcccaatgatccagtcactaatatctgccaggcggcagacaagcagctcttcaccctg
gtggaatgggccaagaggatcccgcacttctctgaactgcccttggacgatcaggtcatc
ctgctgcgagcaggatggaacgagctgctcattgcgtcgttctcgcaccgctccatagcc
gtaaaggacggaattctgcttgccaccgggctccacgtgcacaggaacagcgcccacagt
gccggagtgggagctatattcgacagagtgctcacagagttggtgtcaaagatgagggat
atgcagatggataaaacagagctgggatgcctacgagccatagtgctgttcaacccagac
tctaaaggcctgtcaaaccccagtgaagtggaggctctgagggagaaggtttacgcctct
ctggaggcatactgcaagcataaataccccgatcaacccgggaggttcgcaaagctgttg
ctgcggctgcctgcgctgcgttccatcggccttaagtgtctagaacacttgttctttttc
aagctcatcggggacacgcccatcgacaccttcctcatggagatgttggaggcgcctcat
caaatgacataa
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