Clarias gariepinus (North African catfish): 128507384
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Entry
128507384 CDS
T10780
Symbol
smpd4
Name
(RefSeq) sphingomyelin phosphodiesterase 4 isoform X1
KO
K12353
sphingomyelin phosphodiesterase 4 [EC:
3.1.4.12
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar00600
Sphingolipid metabolism
cgar01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
128507384 (smpd4)
Enzymes [BR:
cgar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.12 sphingomyelin phosphodiesterase
128507384 (smpd4)
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Gene cluster
GFIT
Motif
Pfam:
mit_SMPDase
Glyco_trans_2_3
Motif
Other DBs
NCBI-GeneID:
128507384
NCBI-ProteinID:
XP_053334217
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Position
19:complement(13185495..13208172)
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AA seq
820 aa
AA seq
DB search
MSAPAAIQQPSYLLANLKTDWSNKPLLQRCQELLKVIDDYPAKELHLVFPWLVEGIFGSL
DGVIVGWNLRFVHARMNEYNIVLDFLDPGGPMMKLVYKLQAEDYKYEIPISYLPGPVKAS
IHEGVLPDCPLFHNKLQFPMSGLITFNPFEYYMFNFACSLISPKNYPPGQHVSCSDSAYF
VLVDAYLKHFLPTEGNVPPSPFSDPRGSVASPAPRSPSVPYVGYGVHSSSLLKRHISHQP
SVNADPAAQEIWRSETLLQVFVEMWLHHYSLEVYQKLQSPQVKLALLQYRLNMSSMLCQP
PAAPGSGTFHTYQEPFSPTEEHVLVVRLLIKHLHAFSNSLKQEQPSSSPSTHSHASPLEE
FKRVVVQKFVQQKLYVFLQHCFGHWPLDSSFRAVLETWLSYIQPWRYTGEKNNTKAEAQN
RLVPDKWASFVQENLLMYTKLFQGFLNRALRTDLVNAKNALMVFRVAKVFAQPNLPEMIQ
KGEQLFLEPEHVLHHRQARVFLSPAHGGSFLSSRQPAGTDAVFKVKSHVYSLEGQDCQYK
QMFGSELRGVVLKLIQIIAQARQTAKRISDQSAEVAANSSFLSWFSMSFSDPNNMFNGAE
ADDMGECVKKTHEFLDRALDYLCQIFRLNSGQLTQLMENMTSTDDDGESKQLPDCIQSEN
GLVLTDLGRLQIINGLRRFEIEYQGDPELQPIRSYESAFLVRTLFQLSSFINERLGGHME
TLCSRRDFLGRVSRHYLNASPASVQRSRSPAQRHTTGRLQRPRLSLRPLASYRTLLSLLL
LYLLFALFSFGLLSSTALILIICLLYELLVVLFADKLKTH
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctcctgctgccatacagcagcccagttacctgctggcgaatcttaaaacagac
tggagcaataagccactacttcagcggtgtcaggagctgttaaaggtgatcgatgactac
cctgccaaggagcttcacctggtttttccctggctggtcgagggaatcttcggcagtctg
gatggtgtcatcgtgggctggaacctgcgatttgtgcatgctcgcatgaatgaatataac
atcgtgctggactttcttgatccaggtggccccatgatgaagctggtgtacaaactacaa
gcagaggactacaaatatgagatccctatcagttatttgccaggtcctgtgaaggcgtcc
attcatgaaggagttcttccagactgccccttgtttcacaataagctacagttccccatg
tcaggccttattacattcaatccatttgagtactacatgttcaactttgcttgcagtctc
atatcacctaagaactatcctcctggacaacatgtcagctgttcagacagtgcttacttt
gtgcttgttgatgcctacctcaagcacttcctgcccacagaaggaaacgtacctccatct
cctttctctgatcccaggggctctgtggcctctccagctccacggtctcccagcgtgcct
tacgttggctatggagtccacagcagcagcctgttaaagcgtcacatatcccatcagccc
tcagtcaacgctgaccctgctgctcaggagatctggagatccgaaacacttctacaggtg
tttgtggagatgtggctccatcactactcactggaggtataccagaagctgcagtctcct
caggtgaagctggcgttgctgcagtaccgcctcaatatgtccagcatgctgtgccagccc
ccggccgcaccaggctctgggaccttccacacataccaagaacccttcagccctacagag
gaacatgttctggtggtgcgcctactcatcaaacacctgcacgctttctctaacagtctg
aagcaggagcagccctcgtcctccccgtccacacactcgcatgccagtcctctcgaggag
ttcaagagggtggtggtgcagaaatttgttcagcagaagctgtacgtcttcctgcagcac
tgttttggtcactggcctcttgattcctcattcagagcggtgttagaaacatggttgagt
tatatccagccctggagatacacaggagagaaaaacaatacaaaggcagaggctcagaac
agattggtccctgataaatgggcatcctttgtacaggagaatctactgatgtacacaaag
cttttccagggtttccttaatcgggctttacgcacagacctagtcaatgccaaaaatgca
ctgatggtttttcgggtcgccaaagttttcgcacaaccaaacctaccggagatgattcaa
aaaggagaacagctgttcctcgaacccgagcatgtcctccatcaccgacaggcacgtgtc
tttctttctcctgcacacggtggtagcttcctgtcctctcgacagcctgcagggacagac
gccgtctttaaagtgaagagtcatgtgtacagtctggaagggcaggactgccagtacaag
cagatgtttggcagtgagctgcgtggagtggtgctgaagttgatacagatcatcgctcag
gcccggcagacagcgaagcggatctctgatcagtctgctgaagttgcagcaaacagctcg
ttcctgtcgtggttcagcatgagcttctcggatcccaacaacatgtttaatggagcagag
gctgacgatatgggagagtgtgttaaaaagacccatgaatttctggacagagccctggat
tacctatgtcagatatttcggctaaattcaggacagctgactcagctgatggagaatatg
acctcgacagatgatgacggcgagtcaaaacagctgcctgattgcatccagagtgaaaac
ggtctagtgctcacagatctgggcaggctgcagatcatcaatggccttcgccgatttgag
attgagtatcagggtgatccagaacttcagccgataagaagctatgaaagcgcttttctg
gtgcggactctgttccagctctcctcttttatcaacgagcggttgggaggccacatggag
acgctgtgttcacggcgggacttcttgggccgcgtcagtcgacactacctgaatgcatct
ccagcgtctgtgcagagatctaggagtccagctcagcgtcacacgacagggagattacag
cggccacggctgagtctgcgacctctagccagctatcgtacactgctcagcctgctgctg
ctctacctgctgtttgctctgttctcattcggtctgttgtccagcactgccctcattctc
atcatctgtctcctgtatgaactgctcgtggtcctgtttgcagataaactcaaaactcac
tga
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