Clarias gariepinus (North African catfish): 128507432
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Entry
128507432 CDS
T10780
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128507432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128507432
03036 Chromosome and associated proteins [BR:
cgar03036
]
128507432
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
128507432
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
128507432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
128507432
NCBI-ProteinID:
XP_053334325
LinkDB
All DBs
Position
19:complement(3741468..3760522)
Genome browser
AA seq
1803 aa
AA seq
DB search
MFNKSFSTPFGAATGGFGASSTFGQQNAGFGATGGFGASAFGTANNSGGLFGATQNKPGG
LFGSSTFSQPVTSSTSSAFGFGATSGTSNSLFGNTNTGGGGLFSQQGNAFGANKPASFGT
FGTSTSSGGLFGTTNTTSNPFGGTPSLFGATGFTATQPGTTIKFNPPTGSDTMVKSGVTT
SINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPSNAGGLFGAAATAPPSTATGLFGSS
GTGFSFNQAKPSFSSATSGFGTTPGLFGQTQQTNSLFKPFGQATTTQNTGFSFSGTNTMG
QANTSSIGLFGNTAASQPGGLFGNTANTSTAAGFGTGTGLFGQPNAGFGNVGTQNLFGNK
PAGFGTTTTSAPSFGTGTGLFGNKPTLTLGTNTNTSTFGAFGANPPGCSLFGNKPATGTL
GTGLSAGFGAGVGTGPTPLFGNNQNKIGSTLGTVGSFGANSFNTGASTLNFGAPQQPVAL
TDPNAAAQQAVLQQQLNALSYSPFGDSPLFRNPLSDPKKKEERLKPTNPAAQKALMTPTH
YRLTPRPATRVRPKALTSSGSGKSQLFDGLDDDEQSLTNGAFMPRRSIKKLVLKNLNGSS
LYSNSVNSEADDLNSPSEYPQNGLSLRADDRETHDIEVEGGAEDDMQVSKFYNNPIAKPI
PHTQPSPSLHDTISELNMRRAVSARNGLDLSSEEISLGDDSIQEERDDELDTQRPPHPAG
IVLTRAGYYTIPSMEELGKMLNENGECIVENFTIGRKGYGSVFFPGEVNLTNLNLDEVVH
FRRKEVIVYPDDKDKPPVGEALNRRAEVTLDGVWPNDKTTCTQIKSPQRLSEMNYEGRLE
NASRRQGARFLEYRPETGSWVFEVAHFSKYGLQDSDEEEEVPPAKTETKKLKTAIPAGLQ
QIPPSQQHQQMAPQAQSTAVLELLSRVSELDSDMVDITQEPPAEGVLSEEDDSVMEDDTR
MALRAVTPAEPEPISASSQIASSLGINPHTLQIMKASLFAGDDDCDLFSEHLPSKLLEEV
ASPRLLLGKAQARLSVGGLLQSKFTSGGGMFSQLPEIPFGAISQKLSKPAATESPWPSLS
TSIILPPPAPEVTLRTVGARRLGGPVPLDNSVTRGKGRLLMDAALYMGRSFRVGWGPNWT
LVHCGNPLSTSSESKDQNKEDMSFSFLPRPVKTRQITDGPFKVHIEQVVGLEHKETAASL
AVYHQPLEIGLKHSTISTDDTCPFIQPEKGVNALHDYAKWIVEVLKEAGAGDVVLAHWQQ
VWTLCEALWGRLGDQDLEPVVGRGYREQHARRRTFSRWLSESAAQHVQDEVCQSQTQRHV
SAIFSYLTGHCISEACKLAQKNGDHRLSLLLSQSVGSQFSRDLLALQLADWNKMQTDSFI
QEERLRIFTLLAGKPVWETTDCCINVCSELDWKRCLAVHLWYMLPPTASVADALAKYEVA
FQGSEEVMKYACAPLPPYMADVDSEALDEMEDSESNKSLHDICFHLLKLYSDKHYSLEQL
LDPITVTAEQLDYRLSWHLWNVLQALNYTHLSVSRQSLLHSSYAAQLESAGLWEMAVFVL
LHIPNSFLRERAVREILNQHCTLEDTEESAEKERFLTDKLFIPTQWIHEAKATRARRDGD
KHNEALHLYRAEHWNPCHRLVIRNLASDCIINDNHEYLKEFLEGLAVPERSVQVQDWDTS
GRVYLDYIHVIQTLKVIQQMESPGYELERLHTNVTSLCSRIDLLPCFKAKDRLAQSEMAK
RLANILRAVLSLQQGGEGTPDPRYIPLCHLAPHIGRLPMPEDYALEELRSLTQSYLREYI
GCH
NT seq
5412 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcattcagtactcccttcggggcagcaacgggaggatttggggcttca
tctacatttggacaacagaatgcagggtttggagcgacaggtggttttggtgcttctgct
tttggaactgcaaacaacagcggtggtctctttggggcaacacagaacaaacctggtggg
ctgtttggctccagcacgttcagtcaacctgtcacttcgtctaccagcagcgcatttggg
tttggtgcaacaagcgggacctccaacagcctctttggaaacactaatacaggaggtgga
ggtcttttctctcagcaaggcaatgcatttggtgccaacaaacccgcctcttttggcact
tttggcactagtactagcagtggaggactgtttgggacgaccaacaccacgtccaatcca
tttggaggaaccccttctctctttggagctacgggctttactgcgacccagcctggcacc
accataaaatttaatccaccaaccggaagtgatacaatggtaaagagcggtgtgacgacc
agcatcaacaccaagcaccagtgtatcacagcaatgaaggagtatgaaaacaaatctcta
gaggagctaaggttagaggattaccaggcagggaggaagggaccctccaacgcaggtggc
ctgttcggggctgcagccacagcacctcccagcactgctacgggcctcttcgggtcctcg
ggtactgggttcagcttcaaccaggcaaagccctccttcagctctgctacaagtggcttt
gggacgacccccggtttatttggccagacacagcagaccaatagtctcttcaagcccttt
ggtcaggccactactacccaaaatacaggcttctcattcagtggcaccaacaccatgggc
caggccaacaccagtagcatagggctgtttggcaacacggctgcatcacagcccgggggt
ttgtttggaaacacagccaacaccagcacggccgcaggcttcggcacgggcactgggctc
tttggacagcccaacgccggctttgggaatgtgggtacacagaatctgtttggtaacaag
ccagcaggttttggcaccaccaccacgagcgctccctcctttggcacaggcaccggtctg
tttgggaacaaacctacgcttactttggggacgaacacaaacacctccacctttggtgcg
tttggagctaatcctcctggatgcagtctgtttggaaacaaacctgccactggtacacta
ggaacaggactcagtgcaggttttggagcaggtgtaggtacagggccaacgcctctgttt
ggaaacaaccagaacaaaataggctccacactgggcacagttgggtcatttggggctaat
agctttaacacaggtgctagcacgttgaactttggggcaccgcagcaacctgtcgccctg
acggatcccaacgctgcagcccagcaagcagtgctacagcagcagctcaatgcactcagc
tattccccttttggagattcgcccctgtttagaaacccgctctcggaccccaagaagaaa
gaggagcgcttgaagccaacaaatccagctgcccagaaagccctgatgacccctactcac
tacaggctcacccctcgtcctgcaacccgcgtacgccccaaggccctcacctcctcaggt
tctggtaaatctcagctttttgatgggctcgacgatgacgaacagtctctcaccaacgga
gctttcatgccaaggaggagcataaagaagctggtgttgaaaaacctgaatggtagcagt
ctgtacagcaactccgtgaacagcgaggctgatgacttgaactcgccgtccgagtaccca
cagaacggcctcagtcttagagcagatgaccgagaaacgcatgacatagaggttgaagga
ggagcagaggatgacatgcaagtctccaagttctacaacaaccccatcgccaagcccatt
ccacacacccagcccagtccgtcgctacacgacaccattagcgagctgaatatgaggaga
gctgttagtgctcgcaatggcctggatctcagcagtgaggagatctctctgggagacgac
agtatccaggaagagagagatgatgagctggacacacagagacctcctcacccagctggt
attgttctcactcgggcgggatactacaccattccctctatggaggagctggggaagatg
ctgaatgaaaacggggagtgtattgtcgaaaactttacaataggaaggaaaggctacggg
tcagttttcttccctggtgaagtgaatttaacaaacctgaaccttgacgaggttgtgcac
ttcaggcgaaaggaggtaatcgtctaccctgatgacaaagataagccacctgtaggagag
gcccttaacagacgagcagaagtgactcttgatggtgtttggcccaatgacaaaaccacc
tgcactcagatcaaaagccctcagcgtctgagtgagatgaactacgagggacgtctggag
aacgcctcacgccgacaaggcgcccgcttcctggagtatagacccgagaccggatcctgg
gtgtttgaggtggcacacttttccaagtacggcttgcaagactccgatgaggaggaagaa
gttcccccggctaaaacggagaccaagaagttgaagacggccatcccggcaggactgcaa
caaatcccaccgtcccagcagcatcagcagatggcgccacaagctcagagtacagcagta
ctggagcttctgagccgcgtgtcggagctggacagtgacatggtggatattacccaggag
cctccagcggagggagtgttaagtgaggaggatgacagcgtgatggaggatgataccaga
atggccctaagagcagtgacccctgctgaaccagagcccatctctgcctccagtcagatc
gcctcctcattaggaatcaatccacatactcttcagattatgaaggcttccttgtttgcg
ggtgatgatgactgcgacctctttagcgagcacctcccttcaaaacttttggaggaggtg
gcgtctccccggcttttgctcggcaaagcacaggccaggctatcagtgggaggacttctg
cagagcaagttcacttcgggtggagggatgttttcacagctgccagagattccttttggg
gcgatctcccagaagctgagtaaaccagcagccacggaaagcccatggccctcactgagc
acctccattattttacctcctccagcccccgaggtcacactgaggactgtaggagcacgc
agactggggggtcctgtgccgctcgataactcggtcactcgggggaaaggtcgcctgcta
atggacgctgcgctgtatatgggtcgctcgttcagggtgggatggggacctaactggaca
ttagtgcattgtgggaatccacttagcacatcttcggagtcaaaggatcagaacaaagag
gacatgagtttcagtttcttgcccagacctgtcaagacccggcagatcactgatggccct
tttaaagtacacatagagcaagtggtgggcttggagcacaaggagactgcagcgagtctg
gccgtgtatcaccagccccttgagatcgggctcaagcacagcacgattagcactgatgat
acctgccccttcattcagccagagaaaggagtgaacgctctgcacgattatgccaagtgg
attgtagaggttctgaaggaggcaggagctggagatgttgtactcgctcattggcagcaa
gtgtggactctgtgtgaggctctgtggggacggcttggagatcaggacttggaacctgtg
gttggcagaggttatcgagagcaacatgcgagaaggcgcactttctcccgctggctatct
gagagcgccgcacaacacgtccaggacgaagtgtgccaaagtcagacacagcgccacgtc
agtgccatcttcagctacctgactggccactgcattagtgaggcttgcaaactggcccag
aaaaatggagatcatcgcttgtccctgctgctgtcccagtctgtgggttcccagttcagc
agagatcttctggctctccagttagcagactggaacaaaatgcagacagactcattcatc
caagaggagagactgcgtattttcaccttactcgcaggcaaacctgtttgggaaactacg
gactgctgtataaatgtgtgctccgaactggactggaagcgttgtttggcagtgcatttg
tggtacatgctgcctcccacagcctctgtagcagatgctctcgccaaatatgaagttgcc
tttcagggttcggaagaggtaatgaaatatgcctgcgctcctcttcctccctatatggct
gatgtggattcggaagctttggacgagatggaggattcagaatctaacaaatccctccac
gacatctgtttccatctactcaaactttacagtgacaagcactacagtttggagcagctg
ctggaccccattacagtgacggccgagcagctagactacaggttgagttggcacctgtgg
aacgtgctgcaggcattgaattacacccacctttcagtttcccgtcagtctctcctacat
tctagctacgctgcccagctggagagcgcaggactctgggagatggcagtttttgttctg
ctgcacatccctaactcgttccttcgagagcgtgctgtgcgggagatcctgaaccagcac
tgcacccttgaggacactgaagagtctgcagagaaggaacgctttcttactgacaagctg
ttcatccccacgcaatggattcatgaagccaaggccactcgggcacgcagagacggagac
aagcataatgaagcactgcacctctacagggctgaacactggaacccctgccaccggctt
gtcatccggaatttggcttcagactgcatcattaatgataatcatgagtatctgaaggag
tttctggaaggcttggcagtgcctgagcgcagcgtgcaggtacaggactgggacacatca
gggcgtgtctatctggactacatccacgttattcagaccctaaaggtcatccagcagatg
gaaagcccaggatacgagctggagcggctgcacaccaacgtgacgtccctctgcagcagg
attgacctccttccctgtttcaaagccaaagatcgtctggctcagtcagaaatggccaaa
cgtctggccaacatcctccgtgcagtgctaagccttcagcagggtggagagggcaccccg
gaccctcgctacatccctctttgccatcttgcaccccacatcggacgcttacccatgccc
gaggactatgctctggaagaactccgcagccttacccagtcttacctacgcgaatatatt
ggttgtcactga
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integrated database retrieval system
