Clarias gariepinus (North African catfish): 128507438
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Entry
128507438 CDS
T10780
Symbol
si:dkeyp-50d11.2
Name
(RefSeq) calpain-1 catalytic subunit
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04141
Protein processing in endoplasmic reticulum
cgar04210
Apoptosis
cgar04217
Necroptosis
cgar04218
Cellular senescence
cgar04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
128507438 (si:dkeyp-50d11.2)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
128507438 (si:dkeyp-50d11.2)
04217 Necroptosis
128507438 (si:dkeyp-50d11.2)
04218 Cellular senescence
128507438 (si:dkeyp-50d11.2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128507438 (si:dkeyp-50d11.2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cgar01002
]
128507438 (si:dkeyp-50d11.2)
Enzymes [BR:
cgar01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
128507438 (si:dkeyp-50d11.2)
Peptidases and inhibitors [BR:
cgar01002
]
Cysteine peptidases
Family C2: calpain family
128507438 (si:dkeyp-50d11.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_1
EF-hand_8
EF-hand_6
EF-hand_7
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
128507438
NCBI-ProteinID:
XP_053334333
LinkDB
All DBs
Position
19:complement(6573566..6590682)
Genome browser
AA seq
704 aa
AA seq
DB search
MELIYATGVAARLRSEWDRNEGLGQNDNALKFLGQDFESLRARCHQSGCLYEDETFPAQP
SSLGFKELAPGTAKTKGVRWMRPTEFCTDPHFIVDGATRTDICQGALGDCWLLAAIACLT
LNEPLLRRVVPHGQSFHQQYAGIFHFQFWQFGEWVDVVIDDRLPVRDGKLLFVHSAEGAE
FWSALVEKAYAKLNGCYEALSGGCTSEGFEDFTGGVTEMYELKKAPANLFSIIQRAVERG
SLMGCSIDVTGFFDMEAVTFKKLVKGHAYSVTGVEEVEFKGNLVKLLRIRNPWGEVEWTG
AWSDNSKEWNGIDPSVRARLHNCREDGEFWMSFNDFMREFSRLEICNLTADALHSREVKK
WNSSLYPGEWRRGSTAGGCRNYPSTFWINPQYKIVLKDPDTEGQDGCSFLVALMQKDRRL
LRREGKDMETIGYAIYEVPKEFLGSTGVHLKRDFFLKHTSSARSELFINLREVSSRFCLP
AGEYIIVPSTFEPHKEGDFVLRVFSEKATDSEELDDELSADLPEEIVLQESEIDEGFKSL
FIKLAGKEMEIDIPKLQMILNRVISKHKDIKTDGFEKESCRSMINLLDTTGKGKLGLIDF
HVLWEKIKRYLAVFREFDLDKSGTMNAYEMRLAIESAGFKLTNYIFQLIILRYAKPDMNV
DFDSFVTCLIRLESMFKTFKSMDSDEDGVVSFNFSQWISLTMFT
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggagctgatatatgccactggagtggctgctcgactgaggagcgagtgggaccgcaat
gaaggtcttggacaaaacgataatgctctgaagttccttggccaagactttgaatcactc
cgtgccagatgtcatcaaagtggctgtttatatgaagacgagaccttcccagcccaacct
tcctcactgggattcaaggagctggcacctggcactgccaaaacaaaaggagtgcgctgg
atgagacccacggagttctgtaccgatccacacttcattgtagatggagccactcgcacg
gacatctgccaaggagctctaggggactgttggctgctggcagccattgcgtgtcttact
ctgaacgagccactgctgcgccgtgtggtacctcatgggcagagcttccatcagcaatat
gctggaatatttcacttccagttttggcagtttggggaatgggtggatgtagtgattgat
gaccggttgccggtaagagatgggaagcttctgtttgtccactcagctgaaggggcggag
ttctggagtgcactagtagagaaggcatatgccaaattaaatggctgttacgaggcgctt
tctggaggctgcacctctgaggggtttgaggattttactggtggtgttacagaaatgtat
gaactaaagaaagctccagccaacctcttcagcatcatccaaagagctgtagaaagagga
tctctaatgggctgctccatagatgtcacaggtttctttgacatggaggcagtcaccttc
aaaaagctggtgaaaggccatgcttattctgttacaggagtggaggaggtggaatttaaa
ggaaaccttgtaaagttgcttcgcatcaggaacccctggggagaagtggaatggactgga
gcctggagtgataattccaaggagtggaatgggattgacccttccgtaagagcacgtctg
cataactgccgtgaagatggggagttctggatgtcatttaatgattttatgagggagttc
agcaggttggagatctgtaatctgacagcagatgcgctacacagcagggaggtgaagaag
tggaattcgtccttgtacccaggagagtggcggagaggcagcacggctggaggctgcagg
aactacccatcaactttttggatcaacccccaatataaaattgtgctcaaggaccccgac
actgaaggtcaagatggctgcagttttctggtggccctcatgcaaaaggatcggcggctg
ttacgacgagagggaaaagacatggaaacgattggatatgccatttatgaggttcccaaa
gagtttctgggcagcacaggtgtgcatttgaagcgtgacttcttcctcaagcacacatcc
agcgctcgctccgagctctttataaatcttcgggaggtgagctcacgcttctgtctgcct
gcaggggagtacatcattgttccttccaccttcgaaccacacaaggagggagattttgtt
ttgagggttttctcggaaaaagccacagattctgaggaacttgatgatgagctttctgca
gatttaccagaggagattgtactacaggagagtgagattgacgaaggattcaaatctctt
ttcatcaaactggctggaaaggaaatggaaatcgatataccgaagctgcagatgattctc
aaccgcgtcataagcaaacataaggacatcaagacggatggctttgagaaggaatcctgc
aggagcatgattaatctcctggatacaacaggcaaaggaaagttgggtttaatagatttc
catgtgctttgggagaagatcaagcgatatcttgctgtgtttagagaatttgacttggac
aaatcaggcaccatgaatgcctatgaaatgcgcctggcaatagaatcggcaggtttcaag
ctgactaactacatcttccagttaataatcttgcgttatgccaagccggacatgaatgtg
gactttgacagctttgtgacttgtctcatccgcctggagagcatgttcaagacattcaaa
tccatggactcagatgaagacggagtggtttccttcaatttctcccagtggatctccctt
accatgtttacatag
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