Clarias gariepinus (North African catfish): 128507676
Help
Entry
128507676 CDS
T10780
Name
(RefSeq) LOW QUALITY PROTEIN: toll-like receptor 13
KO
K18808
toll-like receptor 13
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cgar04054
]
128507676
Pattern recognition receptors [BR:
cgar04054
]
Membrane-bound pattern recognition receptors
Toll-like receptors
128507676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
TIR
TIR_2
LRR_5
LRR_14
LRR_4
LRR_1
LRR_9
LRR_EndoS
LRRCT
LRR_2
Motif
Other DBs
NCBI-GeneID:
128507676
NCBI-ProteinID:
XP_053334709
LinkDB
All DBs
Position
19:3158086..3163873
Genome browser
AA seq
628 aa
AA seq
DB search
MPIYAVRGDDVILLDPPATFVQDTLDPCFNGPSTSRAVDKETVSVDTDLQEFQNLLMLEY
LDLSRNSISTLTCSDFANLTQLNTLYLYSNKISKLLPCVFKDFNNLEKFKLGTNXLLTID
VAFQGLPSLKYLQLTXNKLSRIRKESFKSLSSLSTLDLGDNQIFEIEPHAFSGLKNLTDI
LLYFNMIRGKTLKDPAVFSGMHNLKTLELRSNIIHYDDDTLQNXPVFYLNSLNILSIHSQ
RQGFGKFPSNLPXGLISLIKLYGGRINLNNLHPDTFKSTPKLRVLDLSKNMYTGDDSITA
EVFHPVSKLRMLTIRTTQINSLNFLINANLSRLSALGSSENKLDIISQTLIQSLPHLTYL
DLQKNTFTCDCNNAFFINWALTSYTQVLYLNGYTCGYPLSLRGKSILDINVESCNVNMDF
IMSVLSSVVVMQTLLGSFIYKFLHWQVLYAYYLLLAFLYDSKQKQRHQKHVFKYDAFISY
SANDEPWVVEELIPNLEGKQGWRLRLHHRDFEPGRSIIDNIMDGIXSSRKTICLITHNYL
RSTWCSKEIQLANFRLFDEKKDVLILIFLEDIPTYQLSPYHRMRQLVKKKTYLKWPKHGE
DIRVFWQKLRKNIGEHELLYSVSFMHFF
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgcccatctatgcagtgagaggagatgatgtaattctgcttgatcccccagctacattt
gtgcaagacactctggacccatgttttaatggccccagtacatccagggctgttgataaa
gagacagtgtctgtagacactgatcttcaggagtttcaaaatcttctgatgcttgagtat
ctagatctgagtagaaacagtattagtacattaacctgttcagactttgccaatttaaca
cagttaaatacgctatatttgtacagcaacaaaatttcgaaacttttaccatgtgtgttt
aaggattttaataatcttgaaaagtttaagctggggacaaattaattattgacgatcgac
gttgcttttcaaggccttccttccctgaagtatttgcaattgacataaaataagttaagc
aggattcgtaaggagagctttaagagtttgtctagtcttagtacccttgatcttggggac
aatcagatttttgagattgaaccacatgcattttcagggctaaaaaatctaacagacatt
ttactttactttaacatgataaggggtaaaactttaaaagatccagctgtgttctcaggc
atgcataacctgaaaaccctagaactgcgtagcaatatcattcattatgacgatgatacg
ctgcaaaatnnccctgttttttatttaaattcactgaacattttgtccattcacagtcaa
agacaaggttttggtaaattcccctcaaatctgccttaaggtttaatttccttaataaag
ttatatggtggacgcattaatctgaataatctccatcctgatacgtttaagtccactcct
aagcttcgggttttagacctttcaaagaatatgtacacaggtgatgactccataaccgca
gaagtttttcacccagtttcaaagctgaggatgcttaccatcagaaccactcagattaat
tctctgaatttcttaattaatgcaaatctttctaggctttcagccttgggatcatctgag
aataagttagacatcatcagtcaaacgttgattcagtcacttcctcatctgacatatctc
gacttgcagaaaaacaccttcacttgtgactgcaacaatgctttttttatcaactgggct
ttaaccagttacacccaggtcctgtacctaaatggatatacttgtggctatcctttatct
ctgagaggtaaaagcattttagacataaatgtagagtcgtgcaacgtgaatatggacttc
atcatgtctgtactcagctctgtcgtggttatgcagactcttctggggtcatttatttat
aagttcttgcactggcaggttttgtatgcatactacctattgcttgccttcctgtatgac
agcaaacagaaacagaggcaccagaaacatgttttcaaatacgatgcctttatttcctac
agtgcaaatgacgaaccttgggttgtcgaagaactgattcctaatttggaaggcaaacag
ggctggagactccgtttacatcatagagactttgagccaggaagatccatcatagacaac
atcatggatgggatatagagcagtcgtaagaccatatgcttgatcacacataattatttg
agaagcacgtggtgctccaaggaaatccagctggctaattttagactgtttgatgaaaag
aaagatgtattaatcctgatattcctggaggacattcctacctatcagctgtctccatac
catcggatgcgtcagctggtaaaaaagaagacttaccttaaatggcccaaacatggagaa
gacatacgagtattttggcagaaactgagaaagaacataggggaacatgagcttctatat
agtgtttcatttatgcattttttttaa
DBGET
integrated database retrieval system
