Clarias gariepinus (North African catfish): 128507715
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Entry
128507715 CDS
T10780
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128507715 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cgar03310
]
128507715 (roraa)
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
128507715 (roraa)
Nuclear receptors [BR:
cgar03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
128507715 (roraa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
128507715
NCBI-ProteinID:
XP_053334764
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Position
2:complement(24472652..24726566)
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AA seq
519 aa
AA seq
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MESPPDPTSEPGKSASEAASAVRESPLNLDTLRKAEHQAPVRRHSCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQREQQQQPGEAEPLTP
TYGLSANGLTELHDELSGYMDGHTADGTKPDSGVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFTPTSGFFPYCSFSNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEMESYQNKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDPQNNTVYFDGKYAGPDVFKSLGCDDLISSIFEFGKNLCSMHLSEDELALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRTHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgcctcctgatccgacgagcgagccgggtaagagcgcctccgaggcggcgagc
gcggtcagggagagtccgctgaacctggacacgctgcggaaagccgagcaccaagcgccg
gtgcgcagacacagctgctccagcaccaacagaggtatttcagtaacaaagaagacacac
acttctcaaattgaaattattccctgcaagatctgtggagacaaatcatcaggcatccat
tacggtgtgataacatgtgagggctgtaagggtttcttcaggaggagtcagcagagcaat
gcggcatattcgtgcccacgtcaaaaaaactgcctgatcgaccgtaccagtcgaaaccgc
tgccagcactgcaggctgcagaagtgtctggctgtgggcatgtcacgggacgctgtgaag
ttcgggcgcatgtcaaagaagcagcgggacagcctgtatgccgaggtgcagaagcatcgt
ctccagcagcagcaaagagagcagcagcagcagccgggtgaggctgagccactcacgcct
acctacgggctttcagcaaacggcctgaccgagctgcacgacgagctgagcggctacatg
gacggccacacggctgacggcaccaagcctgactcaggcgtcagcagcttttacctggac
attcagccctcgcccgaccagtctggcctggacatcaacggcatcaagccagagcccatc
tgcgacttcacgccgacctcaggcttctttccatactgctccttcagcaacggcgagaca
tcccccaccgtctccatggccgagctagagcatctggcccagaatatctccaagtcccac
atggaaacatgtcagtatctgagagaggagctgcagcagatgacctggcaggccttcctg
caggaggagatggagagctaccagaacaagcccagagaagtcatgtggcagctgtgtgct
attaaaatcacagaggccatccagtatgtggtggagttcgccaagcgtatcgatggcttc
atggagctttgtcagaatgatcagattgtgctgctcaaagcaggctctctggaggtggtg
ttcgtcagaatgtgtcgtgcctttgaccctcaaaacaacacagtctattttgatggaaag
tacgcaggccctgatgtctttaagtcattaggttgtgacgacttgatcagctccattttt
gagtttgggaaaaacttgtgttctatgcacctgtctgaggacgagctcgccctgttctca
gcgtttgtgttgatgtctgcagatcgctcctggctccaggagaaagtgaaggtggagaag
ctacagcagaagattcagctggcccttcagcatgtcctgcagaagaatcacagagaggac
ggcatactaacaaagttaatatgcaaagtgtcgaccctgcgagcgctgtgcagcaggcat
acagagaagctgaccgctttcaaagcaatatacccggacattgtgcgtacccacttccca
cccttatacaaggagctctttggatcagactttgagcagtccatgcctgtggacgggtag
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