Clarias gariepinus (North African catfish): 128507717
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Entry
128507717 CDS
T10780
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128507717 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgar03041
]
128507717 (ddx46)
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128507717 (ddx46)
Spliceosome [BR:
cgar03041
]
Complex A
U2 snRNP components
U2 related factors
128507717 (ddx46)
Complex B
128507717 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
128507717
NCBI-ProteinID:
XP_053334763
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All DBs
Position
19:complement(12527162..12546046)
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AA seq
1030 aa
AA seq
DB search
MGRESRHYRKRSSSRGRSGSRSKSRSPDSKRVKKEDRARDRGRRERSRSRERRRSRSRER
KRQRRSRSRERKRTRSRERRRSRSRSKGRSKEKSDSGEQSADKKKKEEKEEERVEDQDFD
QTTLEEEMRKRKERVEKWREEQRKKAMENIGEIKKELEEMKQGKKWSLEDDDDDDEEGPA
SVDQEGEDEEDKEKEGKVEEAEELEEDGGEELDPLDAYMEEVKEEVKKFNMGTMRGGNDK
KGGMTVTKVVTVVKTKKTPHTTKKKGELMENDQDAMEYSSEEEEVDLQTALTGFQTKQRK
ILEPVDHQKIQYEPYRKNFYVEVPELAKMTQEEVNEYRLELEGIIVKGKGCPKPIKTWVQ
CGTSMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILD
QRPLEEGEGPIAVIMTPTRELALQITKECKKFSKPLGLRVVCVYGGTGISEQIAELKRGA
EIIVCTPGRMIDMLGANSGRVTNLRRVTYVVVDEADRMFDMGFEPQVMRIVDNVRPDRQT
VMFSATFPRVMEALARRILNKPIEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILGHY
QEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKSGACRLMVAT
SVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQVRYAGDIIK
ALELSGSSVPPELEQLWARFKDQQKAEGKTIKSSSGFSGKGFKFDETEHALANERKKLQK
AALGLHDSDDEDTALDIDEQIESMFNSKKRVKDLAAPGGAAPAASGLTVTAAGLGGLAVP
SAGNIQKLEIAKKLALKINAQKNLGAEAQDVMQQATNAIMRGGTMIAPSISAKTIAEQLA
EKINAKLNYTPIEKLEEERQNAEQSESVKRYEEELEINDFPQTARWKVTSKEALQRIGEY
SEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNSYQ
PTAKGRYKVL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgggacgggagtctcgacattaccggaagcgctcatcatcgcgtggtcgctcaggcagt
cgctctaaaagtcgctctcctgactccaagcgggttaagaaagaggacagagcacgtgac
cggggtcgccgagaacgatcacgcagcagagagaggaggagatcacgatccagagagcgc
aagagacagaggcggtctcgcagtcgtgagcgtaaacgcaccaggagtcgtgaacgcagg
aggtcaaggagccgcagcaaaggcagaagcaaggaaaagtcagatagtggtgagcagtca
gcagataagaagaagaaagaggaaaaggaggaggagcgagtagaggatcaggattttgac
cagacgaccctggaggaggagatgaggaaaagaaaggagcgagtggaaaaatggagagag
gagcagaggaagaaggccatggagaacattggggagattaaaaaggagctggaagagatg
aagcagggcaagaaatggagcctggaagatgatgatgatgatgatgaagagggtccagcc
tctgttgatcaagaaggcgaggatgaagaggataaggagaaggaaggaaaggtggaggaa
gccgaggagctggaggaggacggaggggaagagcttgaccccctggatgcctacatggag
gaagtgaaggaggaagtaaagaagtttaacatgggcaccatgcggggtggaaatgacaaa
aaaggaggaatgactgtgacaaaagtggtgactgtggtaaagacgaagaagacacctcat
accaccaaaaagaaaggagagttaatggagaatgatcaggatgccatggagtattcatca
gaggaggaggaagtagacctgcagacagctctcactggcttccagaccaaacagcgaaaa
attctcgagcctgtagatcatcagaaaatccagtacgaaccttaccgcaagaatttctac
gtagaagttcctgagctggccaaaatgacacaggaagaggtaaatgagtatcgtcttgag
cttgagggaatcatagtgaagggaaaaggctgtcccaaacccataaagacctgggtgcag
tgtggaacctccatgaaggtcctcaacgctcttaagaagcataactatgagaagcctaca
cccatccaggcccaggctattccagccatcatgtcagggcgtgacctcatcggtatcgcc
aaaacaggaagtgggaaaacaattgcattcctgctgccaatgtttcgccatattttagac
cagcgacccttagaagagggcgaagggcctatcgcggtgatcatgacaccaactcgtgag
ctcgcactgcagatcaccaaagagtgtaaaaagttctccaagccactgggtctcagagta
gtgtgtgtgtatggaggaacaggcatcagtgagcagatagcagagctaaagcgtggagct
gaaatcattgtgtgcactcctggtcgaatgattgacatgctgggagccaacagcggacga
gtcacaaacctgcgcagagtcacatatgtcgtagttgatgaagctgatcgaatgtttgat
atgggcttcgaaccacaggtaatgcgcatagtggataatgttcggccggatcgccagacg
gtgatgttttcagcaacatttcctcgagtgatggaggctttagctcgccgtatccttaac
aaaccaattgaggtccaggttggaggaaggagcgtggtttgttctgatgtggagcagcat
gtgattgtgattgaggaagagaagaagttcctgaagctgctggagattttgggtcattat
caggagaaaggctcagtgattatttttgtagataaacaggaacacgctgatgggttgctg
aaagacctgatgaaggcctcgtacccctgcatgtctctgcatggaggaattgatcagtat
gatcgcgatagtataataaatgattttaagagcggtgcgtgtcggctgatggttgccacg
tcagtggctgcgcgaggcctggacgtaaaacagctcatactcgtggtgaactacagctgt
cccaatcattatgaagactatgtgcatcgtgctgggaggactggtagagctggaaataag
ggttatgcatacacctttatcacagaagatcaggtacggtatgcaggtgacatcattaaa
gctctggagctgtctgggtcttctgttcctcctgagcttgaacagctttgggctagattc
aaagatcagcagaaagcggaggggaagactattaaaagcagcagtggattttcagggaaa
ggctttaagtttgatgagactgaacatgctctggctaatgaaaggaagaaactgcagaaa
gcagcacttggtcttcatgactcagacgatgaggacacagcactggatatcgatgaacag
atcgaaagcatgtttaactctaagaaacgtgtgaaagacctggcagctccagggggtgct
gcaccggcagcttcaggactcactgttactgctgcaggacttggtggtcttgctgtacct
tcagctggaaacatccagaagcttgaaatcgccaagaaactggcactgaagatcaacgcg
cagaaaaaccttggtgctgaagctcaggatgtcatgcagcaggccactaatgccatcatg
aggggtggcaccatgattgcaccctctatctctgctaagaccattgctgagcagctggct
gagaaaatcaatgccaagctgaactatactcctattgagaaactggaagaggagagacaa
aatgctgaacagtcagaaagtgtcaagaggtatgaagaggaactggagatcaacgacttt
cctcagacggcgaggtggaaggtgacttctaaagaggctctgcagaggattggagagtat
tcagaggctgccattaccatcagagggacgtacttcccccctggcaaagaacccaaagag
ggagaacgcaagatttaccttgccatcgagagtgcaaatgagttggcggtgcagaaagca
aaagcagagatcacacgactcattaaagaagaactcatacgtttgcaaaactcataccag
ccaacagccaaaggccgatacaaagtgctgtag
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