Clarias gariepinus (North African catfish): 128507882
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Entry
128507882 CDS
T10780
Symbol
ptch2
Name
(RefSeq) protein patched homolog 1
KO
K11101
patched 2
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
128507882 (ptch2)
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Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
Motif
Other DBs
NCBI-GeneID:
128507882
NCBI-ProteinID:
XP_053335030
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All DBs
Position
1:complement(40850713..40875517)
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AA seq
1480 aa
AA seq
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MLSALPHTDYRGAALSFCSPRRRLAWTMAAAPRVPGPDGFGVSPPSYTRSGNPDLTRRPS
YCHAAFALKQIAKGKAAGQKAPLWLRARFQALLFTLGCHIQRHCGKVLFIGLLVFGAFSV
GLRVATIETDIEQLWVEAGSRVSRELRYTKEKQGEEAVFTSQMLIQTPKQEGTNLLTQES
LLLHLEAAVSASKVQVSLYGKSWDLNKICFKSGVPIIENVMIERMIDKLFPCMIVTPLDC
FWDGSKLQGGSAYLPGMPDIQWMNLDPLKLMEELSQFTSLEGFKEMLDKAQVGHAYMNRP
CLDPNDPDCPLSAPNKDLRQSPDIAAELQGGCHGFSKKFMHWQEELILGERMKNSQGFLQ
SAEALQTMFLLMSPKQLYEHFKDDYEIHDINWNEDKATAILESWQRKFVEVVHESLPQNS
SSNVHAFSTTTLNDIMKSFSDVSVIRVAGGYLLMLAYACVTMLRWDCAKSQGAVGLAGVL
LVALSVAAGLGLCSLMGLSFNAATTQVLPFLALGIGVDDMFLLAHSFTESGSTIPFKERT
GDCLRRTGTSVALTSINNMIAFFMAALVPIPALRAFSLQAAVVVVFNFAMVLLIFPAILS
LDLHRRKDKRLDILCCFYSPCSSRVIQIQSQEFSDANDNHTLPHGPPTPTFAGSTITTST
HITTTVQAFTQCDAAGQHIVTILPPTSQISTSPPSVVLSPPDPRPAADPYGSQLFMPSSS
TRDLLAQAEEPRLERECVPLPFLQWNLPRFAREKYAPLLLKTETKTVVVVLFVALLSLSL
YGTTMVHDGLYLTDVVPRDTKEYDFISAQFKYFSFYNMYLVTMDGFDYAQSQRELLQLHN
AFNSVKYVVRDSNQKLPRMWLHYFHDWLRGLQAAFDADWEAGRITYDSYRNGTEDGALAY
KLLIQTGSKKEPFNYSQLTSRRLVDNDGLIPQEVFYIYLTVWVSNDPLGYAASQANFYPH
PHEWIHDKYDTTGENLRIPAAEPLEFAQFPFYLNGLRQASDFIEAIESVRSICEEFMRKG
IPNYPNGYPFLFWEQYIGLRHWFLLSVSVVLACTFLVCAILLLNPWTAGIIVFILAMMTV
ELFGIMGLIGIKLSAIPVVILIASVGIGVEFTVHVALGFLTAIGNRNTRSSVALEHMFAP
VIDGAISTLLGVLMLAGSEFDFIMRYFFAVLAILTLLGILNGLVLLPVLLSIVGPPAEVV
LGNNASAVSSPSPEPIPRIMNNHGYYAGHIPRAPQQAFTEISDSEYYSETTNTSGIGDED
YMHSERNAYITAPTQPPTSHILLEASKNPSFPKLTVVKPYNEIPSATNPKDPPSEETQNA
VNSISSQITRWDGKPEYQGSRRHPLPNDGAYSHGRTTHCGPRLQQGRGPQLNRTKALPHG
CNALQQPNNTVTMVTATASVTVSVHPNLPGSYQGTMHEVFEDSVSDSFENSKRTSQTYGR
ANQPSKRDSLQLQDLESLDNNQHQAKQGLGGTRTQTAKDC
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atgctctccgcgctcccgcacacggattaccgcggcgccgcgctctcgttttgttcgccc
cgtcgacgtctcgcttggactatggccgcggctcccagagtgccggggcccgacgggttt
ggagtttcgcccccgagctacacgcgctccggtaacccggacctcacgcgcagacccagc
tactgccacgccgcttttgcgctcaaacagatcgccaaggggaaggctgcgggtcagaaa
gctccgctgtggctccgggcaaggttccaggctctcctctttactctgggttgtcatatt
cagcgacactgtggaaaagtgctttttattggactcctcgtgtttggagctttctcagtt
ggcctgcgagtggccaccattgaaacggacatcgaacagctatgggtggaagctggcagt
agggtgagcagggaattgcgttacacaaaggagaagcaaggagaagaggcggtgttcacc
tcgcagatgctcatacagacacccaaacaggaaggaaccaatcttcttacccaggaatct
ttgttgctccacctggaggcagctgtgtctgctagcaaagtccaggtgtctctttatgga
aaatcctgggatcttaacaaaatctgcttcaaatctggagtcccaataatagaaaatgtc
atgatcgagaggatgattgacaagctgttcccctgcatgattgtgaccccactggactgc
ttctgggacggctccaaactgcagggaggctctgcctacttaccagggatgcctgatatt
cagtggatgaatctggatcctctgaagctcatggaggagttaagccagttcacttcatta
gaaggtttcaaggaaatgctggacaaggctcaagtaggccatgcctacatgaaccggcca
tgtctcgatcccaatgaccccgactgcccactcagtgctcccaacaaggacctgcgtcag
agtccagatattgctgcggaactacagggtggctgccatggtttctcaaagaagttcatg
cactggcaggaggagctgatcctcggggaacgcatgaagaactcgcaggggtttttgcaa
agtgcagaggctttgcaaaccatgtttcttctcatgagccccaagcagctatatgaacac
tttaaggatgactatgaaatccatgacatcaactggaatgaggacaaggccactgccatc
ctggagtcttggcagagaaagtttgttgaggtggtccacgaaagccttcctcagaactcg
tcctctaatgtccacgctttttctaccaccacactcaatgacatcatgaagtccttttct
gatgtcagtgtcatcagggtagcaggaggatacctgctcatgctggcctatgcgtgtgtg
accatgctccggtgggactgtgctaagagccagggggcagtagggctggctggagtgctg
ctggtggctctgtctgtagctgcaggtttaggattatgctctctgatggggttgtctttc
aacgctgccactacacaggtgctgccttttttggcgctgggaataggggtggatgacatg
ttccttctggctcattctttcacagagagtggctccaccatcccctttaaggaaaggact
ggtgactgtctcagaaggactggcactagtgtggctctcacctctattaacaacatgatc
gccttcttcatggcagccctagtgcccattcctgctcttcgggctttctcgttgcaggct
gctgttgtggtggtatttaattttgccatggtcctgctcatcttccccgcaattctgagt
ctggatttgcatagacgcaaggacaaaagactggacatcctctgttgcttctacagccca
tgttcctcccgagtgatccaaatccagagtcaggagttctctgatgccaatgataaccac
actctccctcatggcccacccacccccacttttgctggttccacaatcaccaccagcacc
cacatcaccaccacggtgcaagctttcacccagtgtgatgctgctggtcagcacattgtc
accattctgcctccaacttctcagatctccaccagccctccctcagttgtgttgtcaccc
ccagaccccagaccagctgctgatccctatggctctcagctattcatgccatccagctcc
acccgggacctgctggcccaagcagaagaacctcgactggaacgggagtgtgtacctctg
ccatttttgcaatggaaccttccccgctttgcccgtgagaagtatgcaccgctgctgctt
aagactgaaacaaagacagtggtggtggtgttatttgtggcactgcttagtcttagcctc
tatggtacaaccatggtccacgatggcctctatttaacagatgttgtgccgagagacaca
aaggagtatgatttcatttctgcccagtttaagtacttctccttctacaacatgtacttg
gttacgatggatgggtttgactatgcccagtcacagcgcgagctcctgcagcttcacaat
gcattcaactcggtcaagtacgttgtgagagacagtaatcaaaaactgccccgcatgtgg
ctccactacttccacgactggcttcgagggctgcaagctgcatttgatgccgactgggaa
gcaggcaggatcacctatgacagttaccgcaatggtactgaggatggagcattggcttac
aaacttctcattcagactggatcaaagaaagagccattcaattacagtcagctgacatct
cgtcgtctggtagataatgatggtctgattcctcaagaggtcttctacatctacctgact
gtgtgggtcagtaatgatccactaggctatgctgcatcccaggccaatttctatccccac
cctcatgagtggattcatgacaaatatgataccactggagagaacctacgtatcccagct
gcagagcctctggaatttgctcagttccccttctacctgaatggacttcggcaggcttca
gacttcattgaggccattgagagtgtgcgctccatctgtgaagaatttatgcgtaagggc
atcccgaactaccccaatggatacccgttccttttctgggagcagtacattggcctgcgc
cactggttcctgctatctgtcagtgttgtcctggcctgtaccttcctggtgtgtgccatc
ttgctactcaacccctggacagcaggcattattgtttttatcttggctatgatgaccgta
gagctgtttggcattatgggcctgatcggtatcaagttgagtgccatccctgtggttatc
ctgattgcttctgttggcattggagtggagtttactgtgcatgttgcactgggcttcctg
actgctatcgggaatagaaacacacgctcaagtgttgctctggagcacatgtttgcacct
gtgatagatggtgccatctccactctacttggagtgctcatgctggctggttccgaattt
gacttcatcatgaggtactttttcgcagtgctggccatattgacattgctgggaattctc
aatggcttggtactgctgcctgttctgctatcaattgtgggccctccagccgaagtcgtt
cttgggaataatgccagtgctgtctccagtccctcacccgagcccatacccaggattatg
aacaaccatggctactatgctgggcacatccccagagcaccacaacaggccttcactgag
atctcagactctgagtactattcagaaacaaccaacacttctgggattggggatgaggac
tacatgcactctgagagaaatgcgtatataaccgcacctacgcagccaccaacctcccac
atactgctggaggccagcaagaacccttcatttccgaagctcacagtggtaaaaccttat
aatgaaattccatcagcaacaaatccaaaagatccccccagcgaggaaacccagaacgca
gtcaattccatcagttcacagatcacacggtgggatggcaaaccggaataccagggatct
aggcgacaccctttacctaacgacggtgcatactctcatggaaggactacacactgtggt
cccaggttacagcaaggcagagggccacagctgaacaggactaaagctctgccccatggt
tgcaatgcactgcagcagcccaacaacactgtcaccatggttaccgccactgcctcagta
accgtgtcagtgcaccccaatctgccggggtcgtatcagggtaccatgcacgaggtcttt
gaggatagtgtatcagactctttcgagaactctaaaaggacttcacaaacttatgggaga
gctaatcagccttccaagagagactctttacaactacaagatctggaatccctagataac
aaccagcatcaagctaaacagggtctaggtggaacacggacccaaacggccaaagattgc
tag
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