Clarias gariepinus (North African catfish): 128507985
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Entry
128507985 CDS
T10780
Symbol
irf1b
Name
(RefSeq) interferon regulatory factor 1b isoform X1
KO
K09444
interferon regulatory factor 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
128507985 (irf1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128507985 (irf1b)
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
128507985 (irf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF
Motif
Other DBs
NCBI-GeneID:
128507985
NCBI-ProteinID:
XP_053335148
LinkDB
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Position
19:complement(18034323..18037291)
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AA seq
306 aa
AA seq
DB search
MPVSRMRMRPWLEDMIDSNSIAGLVWVDKEKKMFSIPWKHAARHGWEMDKDACLFKQWAI
HTGKFKPGISEPDPKTWKANFRCAMNSLPDIEEVKDKSINKGCEAVRVYRMLQVEKNKNK
RSSKSQDSRRRKKVRKIDADMESTEEHLYTHKQQDMITQENTIDSTESTNTASPTYDVPD
CSGYEVEIGPDSTNDIYTGRFQVSPVHTTEYEEKAIVEITRQLELDSSQWLQSNSSGKGF
LCNEVAMTESYQCPESQWSDTSGEELELRFYTELIPGLPSEDLLSYTDMWNSNPHTTGLP
QISCLL
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgtccagaatgcgcatgcggccctggttagaggatatgattgactcaaactca
attgctggacttgtatgggtagataaggaaaaaaagatgttctctattccttggaagcat
gctgcacgccatggatgggagatggacaaagatgcctgtctgttcaaacagtgggcaatc
cacactggcaaatttaagccaggaatctctgaacctgaccctaaaacatggaaagccaac
ttccgctgtgcaatgaactcactgccagatattgaagaagtgaaggacaaaagcatcaac
aaaggttgtgaagctgttcgtgtctaccgcatgcttcaggttgaaaagaacaaaaacaag
aggtcatctaaaagccaggacagtaggaggagaaaaaaggtaaggaagattgatgcagac
atggaatcaactgaagagcacctttacacacacaagcagcaagacatgatcacccaggag
aacactatagacagcactgaaagcacaaacacagcaagccccacctacgatgtgcctgac
tgctcaggttatgaagttgaaattggccctgacagcacaaacgatatctacactggcagg
ttccaggtttcaccagtacacacgacagagtatgaggaaaaagctattgttgagatcaca
cggcaattggaacttgatagttcacagtggctacaaagcaatagcagcggaaaggggttc
ctgtgcaatgaagtagccatgacagaatcttaccaatgtccagagagccaatggagtgat
acctcaggagaggagcttgagctgcgtttctacacagaactgataccaggactgcccagt
gaagatcttttaagctacacagatatgtggaacagcaaccctcacacaactggccttcca
caaatcagttgtctactctaa
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